FastQCFastQC Report
Tue 18 Jul 2023
SRR10346291_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346291_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41532113
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN29694957.149877012036446No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15259173.674065415357027No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8639532.0802047803346775No Hit
GGAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGA8428682.0294368360213215No Hit
CGAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGA5952921.4333294335397768No Hit
GGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4747331.1430504390662715No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3827310.9215302866964654No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3095280.745273904075143No Hit
GGGGAGAGAAAAAAAAAAAAAANNNNNNNNNNNNN1151460.2772457062321871No Hit
ACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACCCCGG1148490.27653059693832577No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1142630.2751196405538047No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGA1033250.24878339322634513No Hit
GAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA926160.22299852646553284No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAA880180.21192757517538297No Hit
CGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA784200.1888177468842002No Hit
GGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA684220.16474480843293476No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA633540.15254220270468782No Hit
GGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA623450.1501127573258794No Hit
CGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA597560.14387902681474454No Hit
GGGGAGAGCGACGAAAAAAAAAAAAAANNNNNNNN556180.1339156522086897No Hit
GGAAAAAAAAGAAAAAAAAAAAAAANNNNNNNNNN552650.13306570749241675No Hit
GGAAAAAAAAAGAAAAAAAAAAAAAANNNNNNNNN496300.11949789311225267No Hit
CCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA451690.10875680705193112No Hit
GCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAA448690.10803447443186913No Hit
GGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA437720.10539314481784252No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA433830.10445652018716216No Hit
CATTGATCATCGACACTTCGAACGCAAAAAAAAAAAAAA429100.10331764242286444No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)