FastQCFastQC Report
Tue 18 Jul 2023
SRR10346292_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346292_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63654839
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN26969334.2368075112090064No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA7186601.1289950792272054No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5747710.9029494207031141No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA5688380.8936288410061017No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAA5203680.8174838051196706No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3855850.6057434219572844No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA3722620.5848133556664875No Hit
GGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA3026010.4753778420521966No Hit
GCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAA2911700.45742005568500455No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2192840.34448912831277445No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA2183730.34305797238761376No Hit
GGGGAGAGAAAAAAAAAAAAAANNNNNNNNNNNNN2130710.33472867632262804No Hit
GGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1929800.30316626831779436No Hit
GCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA1886260.29632625415956204No Hit
GGAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGA1877850.2950050663076848No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAA1867630.293399532437746No Hit
GCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAA1532820.24080180298625842No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGAAAAAAAAAAAAAA1521470.2390187492265906No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA1457810.229017938447696No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1436000.22559164747867794No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAA1434300.22532458215784665No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGAAAAAAAAAAAAAA1382450.21717908987249185No Hit
CGAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGA1318350.20710915630467622No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAA1292640.20307018607022162No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA1179420.18528363570285677No Hit
CCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA1163530.1827873604393218No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCCAAAAAAAAAAAAAA1059030.16637069807057403No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAA952660.1496602638489118No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA904020.14201905372818552No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCAAAAAAAAAAAAAA841790.13224289201328432No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGAAAAAAAAAAAAAA791600.12435818115885894No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAA783840.12313910651788783No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA782650.12295216079330591No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAA774090.12160740835429652No Hit
GGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAA768720.1207637961349647No Hit
GGCGCGCGGGTCGGGGGGCGGGGCGGACTGAAAAAAAAAAAAAA766250.12037576593352158No Hit
GGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTAAAAAAAA719640.1130534632253174No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTAAAAAAAAAAAAAA704510.11067658186991879No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA697010.1094983525133101No Hit
GGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA693100.1088841022753981No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA655470.10297253285017342No Hit
GCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTAAAAAAA642250.10089570723759117No Hit
GGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCAAAAAA641490.10077631332945482No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCAAAAAAAAAAAAAA636970.10006623377053865No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)