FastQCFastQC Report
Wed 30 Aug 2023
SRR10346295_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346295_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97515238
Total Bases9.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG42158464.323268943875212No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA37481293.8436341610528606No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA33464383.4317077706358057No Hit
GCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG33112383.3956108480194653No Hit
GGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC26237042.690557961823361No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG19927732.043550362867391No Hit
ACGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG15128741.5514231734736676No Hit
ACCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG14216041.4578275448602196No Hit
AGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG13867431.4220782602202129No Hit
CGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG13090231.3423778958525434No Hit
CCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG12350481.2665179569166412No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA11573941.1868852742788771No Hit
GCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG10462611.0729205214061006No Hit
AGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA10159781.0418658876677305No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG9967971.0221961412840934No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA9647220.9893038460307096No Hit
ACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG9407300.9647005117292541No Hit
ACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA9384850.9623983074317062No Hit
ACCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT9348060.958625563729845No Hit
AGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA9072180.9303346006292883No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA9068380.9299449179419528No Hit
GTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC7070130.7250282258450725No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG6949750.7126834885025867No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG6662300.683206044167169No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG6608230.6776612697186875No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA6172440.6329718438465997No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT5818580.5966841818096162No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG5790360.5937902751157721No Hit
CCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG5592510.573501138355423No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA5282830.5417440502990928No Hit
ACCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT4816790.4939525451396632No Hit
AGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4608800.47262357089258195No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC4331890.44422698327414223No Hit
CTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC3745070.38404972154198097No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT3665960.3759371432801097No Hit
ACTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG3644200.373705697154736No Hit
GCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC3501330.35905465359167765No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA3357910.3443472085870313No Hit
ACCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA3082450.31609931567823274No Hit
ATACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC2715210.278439560389526No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2659070.27268251142452216No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA2443530.2505792992065507No Hit
ATACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2262270.23199143502064773No Hit
GGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA2232870.22897652159757842No Hit
TGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2067010.2119678977761404No Hit
AGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG2046610.20987591703360248No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA2004330.20554018439661706No Hit
TGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG2002930.20539661709075663No Hit
GGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1978220.2028626541423198No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1957240.2007111955159254No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1941090.19905504409474958No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA1900980.19494184078184784No Hit
ACCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC1880800.19287242061594517No Hit
CCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC1846140.18931810431514304No Hit
GCGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1798840.18446758033857233No Hit
AGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1797460.18432606399422416No Hit
TCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG1792290.18379589044329667No Hit
ACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1791850.18375076929002626No Hit
AGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1722150.17660316841968843No Hit
CCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1610480.1651516248158057No Hit
GCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1605920.16468400559100313No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1541280.1580552979832752No Hit
ACTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1499070.1537267437115828No Hit
TGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1431170.14676372937735127No Hit
CCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1421400.1457618346785966No Hit
GAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGA1391370.14268231596789005No Hit
TCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1299390.1332499439728589No Hit
GCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1215350.12463180369820766No Hit
CCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1150540.11798566291762524No Hit
GCAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATA1146170.11753752782718942No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA1127100.11558193602521896No Hit
GAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATAT1092220.1120050591477816No Hit
CGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1075150.11025456349704033No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT1070920.10982078513719057No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG1047180.10738629382209988No Hit
GGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1011570.10373455684946388No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)