FastQCFastQC Report
Tue 18 Jul 2023
SRR10346296_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346296_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94465717
Total Bases9.4 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG61065576.464310221664861No Hit
GCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG59986126.350041253590442No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA37383503.9573615897077246No Hit
GGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC35551293.763406570025822No Hit
ACGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG32232363.412069587107458No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA29027803.072839641920042No Hit
AGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG28166212.9816330087242124No Hit
CGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG23556112.4936146941011414No Hit
CCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG23232212.459327122875699No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG19177372.0300878042348423No Hit
GCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG11893111.258986897860522No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA10603801.1225024629834757No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA10335831.0941355581940906No Hit
AGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA10162331.0757691067967017No Hit
ACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA9986651.0571718838486135No Hit
ACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG9692681.0260526578123574No Hit
GTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC9376270.9925579668230328No Hit
AGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA9265450.9808267268007927No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA9206330.9745683717194462No Hit
ACCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG8268850.8753281362380386No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG7975830.8443094757858028No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA7768510.8223628895972918No Hit
CCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG6949830.7356986450438946No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG6221410.6585891895575195No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG5125070.5425322712577304No Hit
ACCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT5063990.5360664334977736No Hit
CTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC5048680.5344457397174046No Hit
AGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4875820.5161470377660925No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA4764070.504317349330022No Hit
ACTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG4554230.48210399969758344No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG4030490.4266616639346526No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG3970040.42026251703567763No Hit
ATACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC3563680.37724585311727427No Hit
TCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG3429440.3630354068026605No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA3320540.35150741511865097No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA3198070.33854292346079373No Hit
TGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG3064520.3244055195177315No Hit
GCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC2962480.3136037172088579No Hit
AGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2882600.3051477394703943No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2804170.29684525657069855No Hit
ACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG2778580.29413633731272054No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2690240.28478479658392897No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA2519670.2667285106193604No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2470480.2615213305372996No Hit
CCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG2454860.25986782061898706No Hit
GCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCC2290790.24249961496613637No Hit
GGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2142640.22681667678444659No Hit
TGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1998850.21159528170415515No Hit
ACCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1944490.20584081312800495No Hit
TGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1868400.19778603914052756No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1858130.19669887224801355No Hit
AGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1843790.19518086122185468No Hit
ACCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC1715180.18156639831569796No Hit
ATACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1632100.17277167334685029No Hit
GGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1621130.17161040549768972No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA1533630.16234778591687396No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT1517720.16066357703080789No Hit
CCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC1486350.1573427955879486No Hit
AGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1425570.15090871538084022No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1419630.1502799158344397No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA1416460.14994434435934045No Hit
CGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT1341850.1420462409659157No Hit
GGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA1338400.14168102910815783No Hit
TCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1317930.13951410541879442No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1298730.1374816220364897No Hit
ACTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1218290.1289663635327089No Hit
CCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1203810.12743353231522075No Hit
ACCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1166060.12343737358178311No Hit
GCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG998210.10566902276304112No Hit
CCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCC994750.10530275232018829No Hit
CGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC991050.10491107583505664No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)