FastQCFastQC Report
Tue 25 Jul 2023
SRR10346297_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346297_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102395264
Total Bases10.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG53343315.209548558808344No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA49082644.793448259482001No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA43827614.280238000070003No Hit
GCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG43580454.256100164945129No Hit
GGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC30622162.9905836269927484No Hit
ACGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG21051072.055863638380775No Hit
AGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG20835512.034811883487111No Hit
ACCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG19339241.8886850079316169No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG18642471.8206379154410892No Hit
CGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG16933571.6537454310386854No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA16253391.5873185306695434No Hit
GTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC15180231.482512902159225No Hit
CCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG14852061.4504635683150346No Hit
AGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA14511311.4171856620243686No Hit
AGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA14372581.403637183844753No Hit
ACCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT12886731.2585279334794233No Hit
ACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA12787971.2488829561492218No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG11964601.1684720105804893No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA11610701.1339098652062658No Hit
GCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG11280511.1016632566131184No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG10398021.0154786065105512No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG10378291.0135517595813806No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA9269070.9052244838198766No Hit
ACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG8662280.8459649071269546No Hit
ACCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT7394460.7221486337493109No Hit
CTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC7311850.7140808778030984No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT7231900.7062728994966018No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA6791150.6632289165248894No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA6558900.6405472034331587No Hit
CCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG6002570.5862155890334928No Hit
ATACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC5627440.549580105579883No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG5440610.5313341445166839No Hit
ACCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA5102540.49831796908107No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT4955570.48396476618293593No Hit
AGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4776840.4665098573309015No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC4662580.45535113811513783No Hit
GCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC4349980.42482238241018644No Hit
ACTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG4210900.411239722962187No Hit
AGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG3475210.339391673427396No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG3450250.3369540606878068No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA3330140.32522402598620187No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC3133610.3060307554849412No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA3120160.3047172181713404No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA2947050.28781116282878083No Hit
TGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2821180.27551860211034757No Hit
ATACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2794660.2729286385745341No Hit
TGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG2686740.26238908862034865No Hit
GGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA2602770.25418851403127396No Hit
GCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2575420.25151749205900775No Hit
TCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG2525950.24668621392489404No Hit
ACCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC2469040.24112833968571046No Hit
GGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2294380.22407091015459465No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA2251820.21991446791914124No Hit
AGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC2180570.21295613828389562No Hit
CCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC2113430.206399194400241No Hit
GCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCC1930840.18856731498831822No Hit
TGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1769190.17278045203340656No Hit
CCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1744710.17038971646188636No Hit
GCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1552100.1515792761665227No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT1463840.14295973688783106No Hit
CGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1443370.14096062099122084No Hit
GCGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1333750.13025504773345767No Hit
TCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1281020.12510539549954186No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA1277580.12476944246171384No Hit
ACGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1217790.11893030521411614No Hit
ACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1188420.1160620084928928No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA1178630.11510590958581834No Hit
AGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1149840.11229425610934506No Hit
CGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1135710.11091430947431319No Hit
CGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT1115560.10894644502308232No Hit
GCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTG1099330.10736141077774847No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAAC1049580.10250278762892782No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)