FastQCFastQC Report
Tue 18 Jul 2023
SRR10346298_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346298_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98262010
Total Bases9.8 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG55660865.664535052763524No Hit
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG52796155.372997153223306No Hit
GGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC33689663.4285539243498073No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA29846163.0374058092237277No Hit
CGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG24003992.4428555857955683No Hit
ACGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG22969442.337570745805017No Hit
CCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG21857942.224454802013515No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG21744702.212930510987919No Hit
AGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG21437232.1816396794651363No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA19539251.9884846646226757No Hit
GCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG17495781.780523317200615No Hit
GTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC16894851.719367434067347No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA10998441.1192972747046392No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA10433121.0617653760593744No Hit
CCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG9751430.9923906502624973No Hit
ACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG9022200.9181778390244613No Hit
CTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC8866820.902365013701633No Hit
AGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA8594810.8746829013572998No Hit
ACCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG8344730.8492325772696895No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA7271930.7400550833429929No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG7046320.7170950400872117No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG6194990.6304562668726195No Hit
ACCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT5595460.569442859961851No Hit
ACTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG5407020.5502655604134293No Hit
ATACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC5404910.5500508283923766No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG5375230.547030332475389No Hit
GCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCC5266160.5359304170553808No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA5193500.528535901107661No Hit
AGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA5168810.5260232311551535No Hit
AGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA5010870.509949877882612No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG4970810.5058730225445216No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA4741390.48252524042608125No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG4738990.48228099547322506No Hit
ACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA4638270.4720308489516956No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC4486660.4566016917423122No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4034640.41060019024646455No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA3908010.3977132159213922No Hit
GCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC3866340.39347251292742735No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT3766330.38329462220445115No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC3301760.33601592314262657No Hit
CGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT3068220.3122488538551166No Hit
TCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG2917510.2969112885030542No Hit
TGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG2447370.24906573761314266No Hit
ATACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2442950.24861591982496592No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA2294850.23354397085913464No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT2294530.23351140486542055No Hit
CCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCC2262900.23029245992423725No Hit
CCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC2108270.21455596114917658No Hit
ACCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2031380.20673096347204784No Hit
AGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1870340.19034212713540055No Hit
ACCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC1807220.18391848487528395No Hit
TGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1770640.18019578471883488No Hit
CCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1730260.17608636338703024No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA1706830.17370192203477214No Hit
TGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1706510.173669356041058No Hit
GGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1667260.16967493337455647No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1628900.1657710848780724No Hit
AGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1595780.16240050452865762No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1595240.162345549414265No Hit
CCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1582880.16108768790705583No Hit
ACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1523490.15504364301116982No Hit
GCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG1505150.15317720449642747No Hit
AGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1405440.14302984439255823No Hit
ACCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1404910.14297590696546916No Hit
GGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1375480.13998085323107068No Hit
TCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1340750.13644642522578157No Hit
GTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAAAAAAAA1325120.13485577997030593No Hit
CGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC1302270.1325303644816547No Hit
GGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTC1301170.1324184188782623No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA1209110.12304958956162204No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1180900.12017869367825877No Hit
TCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG1156450.11769044822103679No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAA1011170.10290548707481152No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)