FastQCFastQC Report
Sat 30 Sept 2023
SRR1039750.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039750.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22364903
Total Bases894.5 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCT1781880.7967304843665094Illumina Paired End PCR Primer 2 (97% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)