FastQCFastQC Report
Wed 27 Sept 2023
SRR1039767.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039767.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101812510
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGAAATTAACGATTTAAGTCCTTCTTAAATGAGGC2465880.24219813459072956No Hit
AGCAGAAGAATTAACGATTTAAGTCCTTCTTAAATGAGGC2343090.2301377306187619No Hit
CAAGCAGCGTATGGCTTCTAAACCATTTAAAGTTTATTCG2011530.19757198796100794No Hit
AAGCAGAAAATTAACGATTTAAGTCCTTCTTAAATGAGGC1895930.18621778404245215No Hit
AGAGAGGCTATAAACGACAATGGATGTGATGCCAATGTTC1801620.1769546787521494No Hit
AGCAGAAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG1753490.17222736184384413No Hit
AAGATGGCTATAAACGACAATGGATGTGATGCCAATGTTC1743980.17129329195400447No Hit
CAAGCAGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1693690.1663538203704044No Hit
CAAGCAGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC1652880.16234547208393155No Hit
AGAGAGGCATAAACGACAATGGATGTGATGCCAATGTTCG1543260.1515786223127197No Hit
AGAAGCGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1443980.14182736482972474No Hit
AGAGAGGCTAAACGACAATGGATGTGATGCCAATGTTCGT1325490.13018930581320506No Hit
CAAGCAGTGTATGGCTTCTAAACCATTTAAAGTTTATTCG1321330.1297807116237484No Hit
CAAGCAGCTGTATGGCTTCTAAACCATTTAAAGTTTATTC1320540.12970311801565446No Hit
AGCAGAAGTATAAACGACAATGGATGTGATGCCAATGTTC1305230.1281993735347454No Hit
AAGCAGAATGTATGGCTTCTAAACCATTTAAAGTTTATTC1234370.12123952154799052No Hit
AGCAGAAGTTATAAACGACAATGGATGTGATGCCAATGTT1187350.11662122857004507No Hit
CAGCAGAAGTATGGCTTCTAAACCATTTAAAGTTTATTCG1141580.11212571028845081No Hit
CAGAAGACAATTAACGATTTAAGTCCTTCTTAAATGAGGC1132270.11121128435002733No Hit
AAGATGGCTAAACGACAATGGATGTGATGCCAATGTTCGT1119520.10995898244724543No Hit
CAAGCAGTTGTATGGCTTCTAAACCATTTAAAGTTTATTC1108420.10886874314364708No Hit
AGAAGCGGTATAAACGACAATGGATGTGATGCCAATGTTC1104230.10845720236147799No Hit
CAGAAGACTATAAACGACAATGGATGTGATGCCAATGTTC1104050.1084395228052034No Hit
AGCAGAAGTGTATGGCTTCTAAACCATTTAAAGTTTATTC1058220.10393811133818429No Hit
CAAGCAGGTGTATGGCTTCTAAACCATTTAAAGTTTATTC1039910.1021397075860324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)