FastQCFastQC Report
Wed 27 Sept 2023
SRR1039768.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039768.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53138803
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGAAATTAACGATTTAAGTCCTTCTTAAATGAGGC1245520.23438992406358872No Hit
AGCAGAAGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1092880.20566515207352337No Hit
CAAGCAGCGTATGGCTTCTAAACCATTTAAAGTTTATTCG970710.18267441967031137No Hit
AGCAGAAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG922860.17366970046352004No Hit
AAGCAGAAAATTAACGATTTAAGTCCTTCTTAAATGAGGC835880.1573012474518856No Hit
AAGATGGCTATAAACGACAATGGATGTGATGCCAATGTTC752030.14152181787007886No Hit
AGAGAGGCTATAAACGACAATGGATGTGATGCCAATGTTC744710.14014429342715906No Hit
CAAGCAGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC719150.1353342490608981No Hit
AGAGAGGCATAAACGACAATGGATGTGATGCCAATGTTCG680530.12806649031970105No Hit
AGAAGCGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC677320.12746241197792882No Hit
CAAGCAGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC674890.12700511902761527No Hit
CAAGCAGCTGTATGGCTTCTAAACCATTTAAAGTTTATTC651260.1225582744120149No Hit
AAGCAGAATGTATGGCTTCTAAACCATTTAAAGTTTATTC646130.1215928781835752No Hit
CAAGCAGTGTATGGCTTCTAAACCATTTAAAGTTTATTCG618630.11641775220266064No Hit
AGCAGAAGTATAAACGACAATGGATGTGATGCCAATGTTC614630.1156650066054367No Hit
AGAGAGGCTAAACGACAATGGATGTGATGCCAATGTTCGT602700.11341994286171633No Hit
AGCAGAAGTGTATGGCTTCTAAACCATTTAAAGTTTATTC573530.10793054559396079No Hit
AGCAGAAGTTATAAACGACAATGGATGTGATGCCAATGTT549230.10335761609082537No Hit
CAGAAGACAATTAACGATTTAAGTCCTTCTTAAATGAGGC535810.1008321546121391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)