FastQCFastQC Report
Wed 27 Sept 2023
SRR1039769.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039769.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54186771
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGAAATTAACGATTTAAGTCCTTCTTAAATGAGGC1651830.30484008726041273No Hit
AGCAGAAGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1402290.25878825663924504No Hit
AAGCAGAAAATTAACGATTTAAGTCCTTCTTAAATGAGGC1088330.20084791544415886No Hit
CAAGCAGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC864330.15950941236192132No Hit
AGAAGCGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC859990.15870847886470296No Hit
CAAGCAGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC814400.15029498620613507No Hit
CAGAAGACAATTAACGATTTAAGTCCTTCTTAAATGAGGC689850.12730967121107845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)