FastQCFastQC Report
Wed 27 Sept 2023
SRR1039770.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039770.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54339512
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGCGTATGGCTTCTAAACCATTTAAAGTTTATTCG1267860.23332193340271443No Hit
AGCAGAAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG1180080.21716794217806007No Hit
AGAGAGGCATAAACGACAATGGATGTGATGCCAATGTTCG1166610.21468908296416062No Hit
AGAGAGGCTATAAACGACAATGGATGTGATGCCAATGTTC1117580.20566618264808856No Hit
AAGATGGCTATAAACGACAATGGATGTGATGCCAATGTTC1107310.20377621352212363No Hit
AGAGAGGCTAAACGACAATGGATGTGATGCCAATGTTCGT1079950.1987412032702833No Hit
AAGATGGCTAAACGACAATGGATGTGATGCCAATGTTCGT942020.17335820019877984No Hit
CAAGCAGAAATTAACGATTTAAGTCCTTCTTAAATGAGGC888560.16352005516722345No Hit
AGCAGAAGTATAAACGACAATGGATGTGATGCCAATGTTC845430.15558292095078072No Hit
AGCAGAAGAATTAACGATTTAAGTCCTTCTTAAATGAGGC817290.15040436874000634No Hit
CAAGCAGTGTATGGCTTCTAAACCATTTAAAGTTTATTCG810890.14922658856413729No Hit
CAGCAGAAGTATGGCTTCTAAACCATTTAAAGTTTATTCG724500.13332839647142947No Hit
CAGAAGACTATAAACGACAATGGATGTGATGCCAATGTTC721020.13268797850080066No Hit
CAAGCAGCTGTATGGCTTCTAAACCATTTAAAGTTTATTC696450.1281664067943783No Hit
AGAAGCGGTATAAACGACAATGGATGTGATGCCAATGTTC681660.12544463041920584No Hit
AAGCAGAATGTATGGCTTCTAAACCATTTAAAGTTTATTC659950.12144937922887493No Hit
AGGCAGAAGTATGGCTTCTAAACCATTTAAAGTTTATTCG636570.11714680102390321No Hit
AGCAGAGGGTATGGCTTCTAAACCATTTAAAGTTTATTCG624690.11496054657244623No Hit
AAGATGGCATAAACGACAATGGATGTGATGCCAATGTTCG622150.11449311506514818No Hit
AAGCAGAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG614650.1131129039215516No Hit
AAGCAGAAAATTAACGATTTAAGTCCTTCTTAAATGAGGC613430.11288838957552655No Hit
CAAGCAGGGTATGGCTTCTAAACCATTTAAAGTTTATTCG613160.11283870197435707No Hit
AGGGCGGCTATAAACGACAATGGATGTGATGCCAATGTTC611480.11252953467819145No Hit
AGAAGCGCTATAAACGACAATGGATGTGATGCCAATGTTC590340.10863917953477388No Hit
CAAGCAGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC582990.10728657261404925No Hit
CAAGCAGTTGTATGGCTTCTAAACCATTTAAAGTTTATTC578780.10651181409211037No Hit
AGGGCGGCTAAACGACAATGGATGTGATGCCAATGTTCGT574810.10578122232676657No Hit
CAAGCAGGTGTATGGCTTCTAAACCATTTAAAGTTTATTC572600.10537452010978678No Hit
CAAGCAGAGTATGGCTTCTAAACCATTTAAAGTTTATTCG570140.10492181085468709No Hit
AGCAGAAGTGTATGGCTTCTAAACCATTTAAAGTTTATTC558150.10271531330645738No Hit
AGCAGAAGTTATAAACGACAATGGATGTGATGCCAATGTT557400.10257729219209771No Hit
CAAGCAGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC556770.1024613544560356No Hit
AGAAGCGGATAAACGACAATGGATGTGATGCCAATGTTCG549750.1011694768256292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)