FastQCFastQC Report
Wed 27 Sept 2023
SRR1039771.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039771.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58373392
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGAAATTAACGATTTAAGTCCTTCTTAAATGAGGC1248350.2138559979519436No Hit
AGCAGAAGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1094510.18750152466726622No Hit
AAGCAGAAAATTAACGATTTAAGTCCTTCTTAAATGAGGC891160.15266544729831702No Hit
AGCAGAAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG740170.12679921016068418No Hit
CAAGCAGCGTATGGCTTCTAAACCATTTAAAGTTTATTCG717150.12285563257999467No Hit
CAAGCAGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC707630.12122475253793716No Hit
CAAGCAGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC667230.11430379101491994No Hit
AGAAGCGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC618080.10588385886501164No Hit
AAGCAGAATGTATGGCTTCTAAACCATTTAAAGTTTATTC615640.10546586019877001No Hit
AGAGAGGCTATAAACGACAATGGATGTGATGCCAATGTTC601740.103084638288623No Hit
AAGATGGCTATAAACGACAATGGATGTGATGCCAATGTTC597220.10231031289050325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)