FastQCFastQC Report
Tue 26 Sept 2023
SRR1039772.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039772.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61115326
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGAAATTAACGATTTAAGTCCTTCTTAAATGAGGC1966080.3216999938771496No Hit
AGCAGAAGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1896600.31033132343923026No Hit
AAGCAGAAAATTAACGATTTAAGTCCTTCTTAAATGAGGC1414150.23139040442981518No Hit
AGAAGCGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1222660.20005783819266545No Hit
CAAGCAGGAATTAACGATTTAAGTCCTTCTTAAATGAGGC1138030.1862102478190168No Hit
CAAGCAGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC1107830.18126877045538464No Hit
CAGAAGACAATTAACGATTTAAGTCCTTCTTAAATGAGGC931240.15237421788439776No Hit
AGAGAGGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC835030.13663184910442924No Hit
AAGATGGCAATTAACGATTTAAGTCCTTCTTAAATGAGGC742000.12140980807334645No Hit
AAGCAGAGAATTAACGATTTAAGTCCTTCTTAAATGAGGC660310.10804327542979972No Hit
CAAGCAGTAATTAACGATTTAAGTCCTTCTTAAATGAGGC657410.10756876270282842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)