FastQCFastQC Report
Tue 18 Jul 2023
SRR10398496.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10398496.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54109682
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTAC9576681.769864402455738No Hit
CCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAA7361591.3604940424525134No Hit
CCCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGA5471401.0111683894205847No Hit
CTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAA4431160.8189218336193512No Hit
CGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACGAATTGCA2741720.5066967497609762No Hit
CGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCA1740210.32160787786555467No Hit
GTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACG1227890.22692611647579078No Hit
TGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACT778070.1437949681537585No Hit
GATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTA681700.12598484685236183No Hit
GGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTT565290.10447113697692771No Hit
CAACCCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTT554600.10249552011782291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)