FastQCFastQC Report
Tue 18 Jul 2023
SRR10398497.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10398497.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64787771
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTAC10807071.6680725132525398No Hit
CCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAA8009521.2362703449081465No Hit
CCCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGA6402530.9882312512341257No Hit
CGGGAGGCATCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTAT4775010.7370233496688751No Hit
CTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAA4425350.6830532879422568No Hit
CGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACGAATTGCA3087360.4765343755999878No Hit
CGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCA1804550.2785325026848045No Hit
GTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACG1301600.20090211160374694No Hit
CTGCTCTACTGAATACAACACCTTGACCAAGAGACCAAGTCGTATGCAAG1124920.1736315330249593No Hit
CGAGAGCTTATGCCCTATGTATGGCCTTGGCGTCGTAGTGAATTCTGCGA1113440.1718595936878273No Hit
TCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTATGGCCTTGGC1011570.1561359473225279No Hit
GGAGGCATCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTATGG1003460.15488416787791637No Hit
ATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGG980400.15132485419200484No Hit
GTCGTATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGC900210.13894751835188157No Hit
TGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACT894350.13804302666933857No Hit
CAAGAGACCAAGTCGTATGCAAGTGATTTAGCGCCCCGACATTGAACCAG807280.12460376202786788No Hit
CTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTATGGCCTTGGCG789100.12179767691035397No Hit
GGCATCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTATGGCCT786930.1214627371576034No Hit
GATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTA761660.11756230971428235No Hit
CATCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTATGGCCTTG760270.11734776305238222No Hit
GCCAAATGTTTCTTAAATCATAAACCGGGTATATATCTATTTTAATAAAT744310.11488433519344259No Hit
GGGAGGCATCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTATG729400.11258297495680164No Hit
GTCAAGAACTCGGCGGCGTCTACGCTACACGGGTTGGGGAAAGGGGGTCT690180.10652936338865555No Hit
AAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAG687110.10605550853107758No Hit
CCAAGTCGTATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATC675080.10419867662988436No Hit
ACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAATTTC649280.10021644362483162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)