FastQCFastQC Report
Tue 18 Jul 2023
SRR10398498.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10398498.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17823378
Total Bases891.1 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTAC3227581.810868848767052No Hit
CCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAA2827051.586147137764794No Hit
CTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAA2122241.1907058246758835No Hit
CCCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGA1308650.7342323099470818No Hit
CGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACGAATTGCA1081080.6065516873400766No Hit
CGGGAGGCATCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTAT752050.4219458286751254No Hit
GTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACG621810.34887326072532376No Hit
CGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCA618920.347251794805676No Hit
TGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACT343040.19246632147957587No Hit
CCCGGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGA253840.14241969171051638No Hit
GATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTA234650.1316529335797064No Hit
ACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAATTTC226210.12691757982128865No Hit
CGAGAGCTTATGCCCTATGTATGGCCTTGGCGTCGTAGTGAATTCTGCGA220050.12346144485068991No Hit
GGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTT206740.11599372464636054No Hit
TCTCTATCTCGTGGCAACACGAGAGCTTATGCCCTATGTATGGCCTTGGC179600.1007665325843395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)