FastQCFastQC Report
Tue 18 Jul 2023
SRR10398500.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10398500.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50180090
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTAC9782671.9495122467895136No Hit
CCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAA8363641.6667247906490403No Hit
CCCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGA5762381.1483399093146305No Hit
CTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAA4429560.8827325738156309No Hit
CGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACGAATTGCA3569440.7113259462069519No Hit
CGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCA1968230.39223325426478906No Hit
GTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTTACCACG1380880.27518483924600373No Hit
TGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACT918340.18300883876453788No Hit
GATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTA746160.14869642521565823No Hit
ACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAATTTC724490.14437797939381936No Hit
GGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGTTACTT582840.1161496521827681No Hit
CAACCCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTT560570.1117116370257606No Hit
GCGATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGCGT533520.10632105283191003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)