FastQCFastQC Report
Thu 24 Aug 2023
SRR10400970_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10400970_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34433857
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCGATGATGCTTTTTGTTAAATCTCAGCATCAATTGAATATCTTTACT697360.20252160540714334No Hit
CTCAGCATCAATTGAATATCTTTACTTTTGCAACTTTCGCTTTCTAAACG654540.19008617013191406No Hit
GTTGACTATATTCTGCAAAGAGTAGGGTAAGGTAGAATTAGGACATCAGA602850.17507478177655206No Hit
CCGGGTTCTGTCCACCAGCAAAGCTGGATAGGCGACCATTCATCTAAAAC526210.15281761784629586No Hit
GGCGTTCTTGCACAAACTGCAGATAATTTAATATCTACAATCTAGACATA463630.13464364448048907No Hit
GCCAGAAGGTCTATAAGCCGGGTTCTGTCCACCAGCAAAGCTGGATAGGC455200.13219547261289957No Hit
GCCGGGTTCTGTCCACCAGCAAAGCTGGATAGGCGACCATTCATCTAAAA440720.12799030907284073No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)