FastQCFastQC Report
Tue 18 Jul 2023
SRR10401011_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10401011_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3572874
Total Bases182.2 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTC38917610.892519579475794No Hit
TTTGTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCT2070815.79592227433713No Hit
TGTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTCG1491164.173558877251199No Hit
TCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTCGTA531211.486786267861671No Hit
TAGTCGAACATATCGTTAGATAGTTTGACTGCTGTAGGCACCATCAATAT527511.4764304590646073No Hit
TTGTATCGGGTCGTTCCGGCTTCCACCCTGTAGGCACCATCAATATCTCG454581.2723090710727554No Hit
TTTGTATCGGGTCGTTCCGGCTTCCACCCTGTAGGCACCATCAATATCTC428131.1982790325099626No Hit
TTGGATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAATA407531.1406223673155No Hit
TTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTCGT377321.0560685879210967No Hit
TGGATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAATAT355010.9936258597420452No Hit
GTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTCGT333430.933226304649982No Hit
TAACCGTCGTAGGGGTACAACCCCTACCGAGGGTTCGCTGTAGGCACCAT311660.8722949647818535No Hit
GTGTGGGGGTCGCTGGTTCGAATCCAGTCGCCCCGCTGTAGGCACCATCA287510.8047023208766948No Hit
TTTTGTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATC255930.7163140933601353No Hit
ATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATATCTC246810.6907884241089947No Hit
AAGTGGAGGAGTGCAAGCTCTGAAATGCTGTAGGCACCATCAATATCTCG244820.6852186782965198No Hit
TTCACGCTTTTGAGAACTCCACTGTCAACTGTAGGCACCATCAATATCTC244080.6831475165371071No Hit
TTTGGACAATGGGGGAAACCCTGATCCAGCCTGTAGGCACCATCAATATC239990.6717001495154881No Hit
ATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAATATCTC237830.6656545962717969No Hit
AGTGGAGGAGTGCAAGCTCTGAAATGCTGTAGGCACCATCAATATCTCGT219700.614911133166185No Hit
CTGTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTC197230.5520205862283417No Hit
TTCACGCTTTTGAGAACTCCACTGTCACTGTAGGCACCATCAATATCTCG180720.5058112880554981No Hit
TAGTCGAACATATCGTTAGATAGTTTGACCTGTAGGCACCATCAATATCT168820.4725047678703475No Hit
TTTTGTATCGGGTCGTTCCGGCTTCCACCTGTAGGCACCATCAATATCTC162050.45355643663896344No Hit
TTTGGACAATGGGGGAAACCCTGATCCAGCTGTAGGCACCATCAATATCT157220.4400379078579318No Hit
TTTGTATCGGGTCGTTCCGGCTTCCACCTGTAGGCACCATCAATATCTCG155500.43522385620091836No Hit
ATGGATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAATA151750.4247281040417323No Hit
TTTTGTATCGGGTCGTTCCGGCTTCCACCCTGTAGGCACCATCAATATCT148930.41683529841802425No Hit
TTCACGCTTTTGAGAACTCCACTGTCAATCTGTAGGCACCATCAATATCT148220.414848102675885No Hit
TTGTCTGACTGGCTTAGGTTAGTTAGACTGTAGGCACCATCAATATCTCG147600.41311280498556624No Hit
AGTCGAACATATCGTTAGATAGTTTGACTGCTGTAGGCACCATCAATATC146290.40944628889795726No Hit
ACTGCCTTTGAGACTGTTAGACTAGCTGTAGGCACCATCAATATCTCGTA143260.4009657211533348No Hit
ATGGATGCGGGGGTTTCGCGACCTACCAAATCTCTGTAGGCACCATCAAT140610.39354872296084326No Hit
TATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAATATCT137220.38406056300893904No Hit
TTGGATGCGGGGGTTTCGCGACCTACCAAATCTCTGTAGGCACCATCAAT136150.38106577505951794No Hit
TACTCTGGAACTGCCTTTGAGACTGTTAGACCTGTAGGCACCATCAATAT128240.3589267351717413No Hit
ACCCACCCGATCCCATTTCGAACTCGGACGTGCTGTAGGCACCATCAATA118310.3311339834542164No Hit
TGTATCGGGTCGTTCCGGCTTCCACCCTGTAGGCACCATCAATATCTCGT116930.3272715466596359No Hit
TCAGCCCTCGCTTCACGCCCCCGAAGCGAGGGCCCTGTAGGCACCATCAA112180.31397692725800014No Hit
TTGTATCGGGTCGTTCCGGCTTCCACCTGTAGGCACCATCAATATCTCGT106010.2967079163720859No Hit
TAACCGTCGTAGGGGTACAACCCCTACCGAGGGTTCCTGTAGGCACCATC105940.29651199566511444No Hit
TGGATGCGGGGGTTTCGCGACCTACCAAATCTCTGTAGGCACCATCAATA104460.29236967214628895No Hit
ATGGGGAAACCCATCCTCACCATTTAATTTCGACTGTAGGCACCATCAAT104270.29183788737022354No Hit
TTGGGAAACAGGTTAATATTCCTGTACCTGCTGTAGGCACCATCAATATC104060.2912501252493091No Hit
TATGGATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAAT100640.2816779992801314No Hit
TATGGATGCGGGGGTTTCGCGACCTACCAAATCTCTGTAGGCACCATCAA100020.2799427015898126No Hit
AGGTCGTGAGTTCAATCCTCACCGGCAGCACCCTGTAGGCACCATCAATA97380.27255369206974556No Hit
TTTGTCTGACTGGCTTAGGTTAGTTAGCTGTAGGCACCATCAATATCTCG95940.26852332324061806No Hit
TCAGCCCTCGCTTCACGCCCCCGAAGCGAGGGCCTCTGTAGGCACCATCA95130.2662562407742338No Hit
ACAGCTAAGGTCCCCAAGTCATGTCCTGTAGGCACCATCAATATCTCGTA95070.26608830873968686No Hit
TATAGTCGAACATATCGTTAGATAGTTTGACTGCTGTAGGCACCATCAAT91800.25693601285687656No Hit
GTGTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTC91310.25556456790807625No Hit
GATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAATATCT85410.23905125117762338No Hit
TTGAGTGAAGAAGGCCTTAGGGTTGTAAAGCTCCTGTAGGCACCATCAAT85170.2383795230394355No Hit
TTTGTCTGACTGGCTTAGGTTAGTTAGACTGTAGGCACCATCAATATCTC81590.2283595783114658No Hit
ACCTACAGCTAAGGTCCCCAAGTCATGTCCTGTAGGCACCATCAATATCT75570.211510397511919No Hit
AGTAGGAGGGTCTTTAAGGCCTGACTGCGCTGTAGGCACCATCAATATCT75250.2106147599943351No Hit
ACCCACCCGATCCCATTTCGAACTCGGACCTGTAGGCACCATCAATATCT70270.19667640112693588No Hit
TTGGGGAAACCCATCCTCACCATTTAATTTCGACTGTAGGCACCATCAAT69560.19468920538479667No Hit
ACCCGATCCCATTTCGAACTCGGACGCTGTAGGCACCATCAATATCTCGT69240.19379356786721277No Hit
AAACCGTCGTAGGGGTACAACCCCTACCGAGGGTTCGCTGTAGGCACCAT65120.1822622348283203No Hit
TGATGCGGGGGTTTCGCGACCTACCAAATCCTGTAGGCACCATCAATATC63980.1790715261719277No Hit
ACGGGGCTCAAGACATGCACCGAAGCTTAGGACTGTAGGCACCATCAATA62400.17464931592885727No Hit
TACCCGATCCCATTTCGAACTCGGACGCTGTAGGCACCATCAATATCTCG59170.16560897473574496No Hit
TTGTCTGACTGGCTTAGGTTAGTTAGCTGTAGGCACCATCAATATCTCGT58010.16236228873450337No Hit
ACGGGGCTCAAGACATGCACCGAAGCTTAGGCTGTAGGCACCATCAATAT57670.1614106738720705No Hit
ACTCTGGAACTGCCTTTGAGACTGTTAGACCTGTAGGCACCATCAATATC56670.15861180662962085No Hit
ACGGGGCTCAAGACATGCACCGAAGCTTAGGATCTGTAGGCACCATCAAT54080.1513627404716763No Hit
TACTCTGGAACTGCCTTTGAGACTGTTAGACTCTGTAGGCACCATCAATA53940.15097089905773334No Hit
ACGGGGATATTATTGATGAAATGATATCCCCTGCCTGTAGGCACCATCAA52240.14621282474556896No Hit
ACTGCCTTTGAGACTGTTAGACTAGAACCTGTAGGCACCATCAATATCTC51990.14551310793495656No Hit
ATGGGGAAACCCATCCTCACCATTTAATTTCGATCTGTAGGCACCATCAA51310.1436098782100908No Hit
TTGCCTTTGAGACTGTTAGACTAGAACATAGCTGTAGGCACCATCAATAT50070.14013928282945326No Hit
TATTCACGCTTTTGAGAACTCCACTGTCACTGTAGGCACCATCAATATCT49710.13913169062217137No Hit
TACTCTGGAACTGCCTTTGAGACTGTTAGCTGTAGGCACCATCAATATCT49160.1375923136388241No Hit
TATTCACGCTTTTGAGAACTCCACTGTCAACTGTAGGCACCATCAATATC47990.13431763896515803No Hit
ACCCTGCCAATGCACGTCCCCTGTCATTGGCAGAGCTGTAGGCACCATCA47000.13154676039513288No Hit
TTAAGTGGAGGAGTGCAAGCTCTGAAATGCTGTAGGCACCATCAATATCT46930.1313508396881614No Hit
GGAGGTTGGCTTAGAAGCAGCCATCCTTCTGTAGGCACCATCAATATCTC46510.13017531544633257No Hit
TTAACCGTCGTAGGGGTACAACCCCTACCGAGGGTTCGCTGTAGGCACCA46250.12944760996329566No Hit
TGTCTGACTGGCTTAGGTTAGTTAGACTGTAGGCACCATCAATATCTCGT46240.12941962129087115No Hit
ATTCACGCTTTTGAGAACTCCACTGTCACTGTAGGCACCATCAATATCTC46210.12933565527359767No Hit
GGTGTGGGGGTCGCTGGTTCGAATCCAGTCGCCCCGCTGTAGGCACCATC46090.12899979120450372No Hit
AGGATGAGTCCTTCTTTGTAAAAAGGAGGACTGTCCTCTGTAGGCACCAT45690.12788024430752384No Hit
TTGTATCGGGTCGTTCCGGCTTCCACGCTGTAGGCACCATCAATATCTCG44410.12429769423718832No Hit
ATTCACGCTTTTGAGAACTCCACTGTCAACTGTAGGCACCATCAATATCT43840.12270233990899203No Hit
AACCGTCGTAGGGGTACAACCCCTACCGAGGGTTCGCTGTAGGCACCATC41650.11657282064802735No Hit
ATTGGACAATGGGGGAAACCCTGATCCAGCTGTAGGCACCATCAATATCT41650.11657282064802735No Hit
ATGTCTGACTGGCTTAGGTTAGTTAGAGCTGTAGGCACCATCAATATCTC40770.11410981747467165No Hit
ACCCACCCGATCCCATTTCGAACTCGGACGCTGTAGGCACCATCAATATC39970.11187072368071195No Hit
ACCCACCCGATCCCATTTCGAACTCGGACTGTAGGCACCATCAATATCTC38860.10876398104159285No Hit
GCTGAGGTCGTGAGTTCAATCCTCACCGGCAGCCTGTAGGCACCATCAAT38830.10868001502431934No Hit
TTTAAGTGGAGGAGTGCAAGCTCTGAAATGCTGTAGGCACCATCAATATC38370.10739253609279252No Hit
TTGCCTTTGAGACTGTTAGACTAGAACACTGTAGGCACCATCAATATCTC37820.10585315910944522No Hit
TTCTCTTAGCTCTTTTGAATATCTTCGCTGTAGGCACCATCAATATCTCG37320.1044537254882204No Hit
AGGTCGTGAGTTCAATCCTCACCGGCAGCCTGTAGGCACCATCAATATCT36720.10277440514275063No Hit
ATAGTCGAACATATCGTTAGATAGTTTGACTGCTGTAGGCACCATCAATA36710.10274641647032613No Hit
TACCCTGCCAATGCACGTCCCCTGTCATTGGCAGAGCTGTAGGCACCATC36370.10179480160789325No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)