FastQCFastQC Report
Tue 27 Jun 2023
SRR1041246.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1041246.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3958820
Total Bases201.8 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGTAGAATTTGGATTTATATTAGTGAATTTTCATAATTTTAAGATTTG1287013.250993983055557No Hit
CGGCAATTTATCGCTTGTAAAATACTTGTTCCAGAATAATCGGCTAGACT177080.44730500502675036No Hit
CGGCTAGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATT137150.3464416164412628No Hit
AGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATTATTAT103740.262047781914813No Hit
CAGGCAGTTATATTCGGTAAAGCTAATGATTAGAGGCCTTGGGGACGTAA95650.24161239965444248No Hit
GTCAGCGCGATATGCTCAAGTAAAAGATTAAGCCATGCATGCTTTGATTC88790.2242840038193199No Hit
TAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTC88420.22334938188652173No Hit
CAGCCAGAGATGGGGACGTTGTTTCCGAAAAGCACCGCGGTTTCTGTGGT87040.219863494677707No Hit
TTGTGATAACTGTTTTTATTTTTATATTAGAAAATTATATATTATATAAT84120.2124875594242729No Hit
TGGCAGACATTCTAAATTATCTTTGGAGGCTGAGTAGTAACTGAGAACCC76050.19210269726837795No Hit
ATACCCGGTTTATGATTTAAGAAACATTTGGCCTACAATATTTTATATTA74170.1873538074476738No Hit
CCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATGTTTGAA66260.1673731061275835No Hit
GGATAGCGGCACTGTTGGTTCGCTTGCTCCTTGGAGTCGGGTTGCTTGAA66230.1672973259708701No Hit
ACTGCGAGTCAAAGGGTGTTAAAACCTTGCGGCGAAATGAAAGTAAAGGT62010.15663758392652355No Hit
AGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATG61710.15587978235938993No Hit
CAACCTGAACTCAGTCGTGATTACCCGCTGAACTTAAGCATATCATTTAG60860.15373267791917794No Hit
GGAAACATCTGGAGAGAGGTTACCCGCACTCAAGTTCTCGCCAAGGTTTC57360.14489165963595213No Hit
CATATGGATAACTGCGGAAATACTGGAGCTAATACATGCAACTATACCCC53410.13491393900202586No Hit
GGCCTACAATATTTTATATTATGGATTTTAGTTTTAGTTAACTAAATGAA52280.13205955309915582No Hit
GCTAGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATTAT51840.13094811080069316No Hit
AGGCCATAAACCAGAGAGGGTGCGAGCCCCGTTCTGGATAGCGGCACTGT48460.12241021314432078No Hit
AGGGCAGAATATTATATAATAGTATTTCACTATATTTAATTTAAAGAATT47810.12076830974886456No Hit
AAAGTGGGTGATAAACTTCATCTAAGGCTAAATATCGACTCGATTGCGAT42240.10669846065241664No Hit
TTGGAGGCTGAGTAGTAACTGAGAACCCTCATTAACTACTTAATTTTTTG41690.10530915777933829No Hit
AGGCAATAAAAATTTACCTCGGCAATTTATCGCTTGTAAAATACTTGTTC41460.10472817657786918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)