FastQCFastQC Report
Fri 30 Jun 2023
SRR10446726_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446726_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences257572751
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length18-69
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT180320607.000763834680633No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC174420156.771684866618519No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC143450685.569326702574994No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTAATAC112052384.350319650078203No Hit
CTCGGGGGGCCCAAGTCCTTCTGATCGAGGCAC76191752.958067175358934No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT60410712.3453843531763963No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC52894542.053576699966993No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACAC52730662.0472142257004506No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT47973881.8625370818048996No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCG37895001.4712348201770769No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC36010941.3980881075420901No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATAC35986631.3971442965253729No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC35950591.3957450801928966No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT35681391.385293664080173No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG33895521.3159590782955142No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACAC33014111.2817392318025131No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAG32143341.2479324724842498No Hit
AACTGTGGTAATTCTAGAGCTAATACATGCC27719891.0761965267047988No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAG25526150.9910268031419209No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC23510320.9127642543212966No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC21496780.8345906124207991No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCT20644640.8015071438981525No Hit
CGTTTACTTTGAAAAAATTAGAGTGTTCAAAGC19282380.7486187853776505No Hit
AACTGTGGTAATTCTAGAGCTAATACATGCCG17371050.6744133427374854No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT17250960.6697509706684773No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC16141010.6266582911947856No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC15189930.5897335778348697No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC14559310.565250397935145No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGA13012970.5052153206998204No Hit
TTCCTTGGATAACTGTGGTAATTCTAGAGCTAATAC11945230.4637614015311736No Hit
TCCTTGGATAACTGTGGTAATTCTAGAGCTAATAC11899870.4620003456809762No Hit
GCTGGGCCGGTCGGGCTGGGGCGCGAAGCGGGG11594720.4501532073942092No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGAC11584200.4497447790973821No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGAC10361220.40226382487175444No Hit
GCTGGGCCGGTCGGGCTGGGGCGCGAAGCGGG10293500.39963466477088644No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC9634020.37403102473366834No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC9355560.3632200985421785No Hit
TTCCTTGGATAACTGTGGTAATTCTAGAGCT9248210.35905234401134306No Hit
CTCGGGGGGCCCAAGTCCTTCTGATCGAGGC8465320.3286574362829242No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTA8265230.3208891456068658No Hit
TTCCTTGGATAACTGTGGTAATTCTAGAG7647320.2968994185258362No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCG7630650.29625222273609214No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC7405220.2875001323412506No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC7324350.2843604368693488No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC7176530.27862147576317187No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTAATA6932990.26916628304365936No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG6930950.2690870821191796No Hit
CGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC6856820.26620906028992175No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGC6769020.2628003146186842No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTAA6735750.2615086407179772No Hit
TCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC6303990.2447459979957274No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCC6265110.24323652155270103No Hit
CCTTGGATAACTGTGGTAATTCTAGAGCTAATACATG6220350.24149876009205645No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAG6103060.23694509517429505No Hit
GCTGGGCCGGTCGGGCTGGGGCGCGAAGCGG5751150.22328254746170725No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC5735030.22265670486238662No Hit
TCGGGGGGCCCAAGTCCTTCTGATCGAGGCAC5560860.2158947318150125No Hit
CTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAG5288880.20533538503069373No Hit
CCTCGGGGGGCCCAAGTCCTTCTGATCGAGGCAC5045850.1958999925423012No Hit
CTCGCCGGAATACTCCAGCTAGGAATAATGGAAT5008930.19446661110514754No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC4905500.19045104658605755No Hit
CTCGGGGGGCCCAAGTCCTTCTGATCGAG4808300.1866773554784916No Hit
CGCGTGCCGGGGGGCGCGGCGGCGACTCTGGACGCGCGCC4722760.1833563520079032No Hit
TCCTTGGATAACTGTGGTAATTCTAGAGCT4545420.17647130693572474No Hit
CTGGGCCGGTCGGGCTGGGGCGCGAAGCGGGG4297200.16683441797769982No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAG4284810.16635338883343292No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCG4205220.1632633880592439No Hit
CTGGGCCGGTCGGGCTGGGGCGCGAAGCGGG4119220.15992452555666498No Hit
AGGGGCTCTCGCTTCTGGCTGCAAGCGCCCGGCG4057110.15751316799811638No Hit
TTCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC3934330.15274635941594614No Hit
AACTGTGGTAATTCTAGAGCTAATACATGC3837990.149006056933406No Hit
CTCGCTGCGATCTATTGAAAGTCAGCCCTCGACAC3781930.14682958446951558No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG3765140.14617772980186092No Hit
CGGCGGGGCGCGGGAAATGTGGCGTACGGAAGACCCC3735070.14501029264543594No Hit
ATGCGTGCATTTATCAGACCAAAACCAAC3619070.1405067106652132No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATAC3572160.13868547764200415No Hit
CTTGGATAACTGTGGTAATTCTAGAGCT3551470.1378822094422558No Hit
CGGGGGGCGCGGCGGCGACTCTGGACGCGCGCC3507910.13619103676071698No Hit
TCCCCGGCGCCGCTCGGGGGGCCCAAGTCCTTCTGATCGAGGCAC3499910.13588044490001194No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC3446500.1338068559899801No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAA3433770.13331262669163324No Hit
ATTGAAAGTCAGCCCTCGACACAAGCTTTTGT3370040.13083837428129189No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT3324970.129088577386045No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCAC3302240.1282061082618169No Hit
TTCCTTGGATAACTGTGGTAATTCTAGAGCTAATACATG3241800.12585958675419048No Hit
CTGCGATCTATTGAAAGTCAGCCCTCGACACAAG3167150.12296137645398679No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC2885080.11201029568535376No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC2884410.11198428361701972No Hit
TCCGAAGCGTTTACTTTGAAAAAATTAG2830700.10989904751221141No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC2773390.10767404507008585No Hit
CGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCG2758310.1070885794126569No Hit
AACTGTGGTAATTCTAGAGCTAATAC2747920.10668519823356624No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA2672120.10374234035338621No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2655050.10307961497060687No Hit
CTCGGGGGGCCCAAGTCCTTCTGATCGAGGCA2648030.10280707061283824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)