FastQCFastQC Report
Fri 30 Jun 2023
SRR10446727_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446727_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26046685
Total Bases879.9 Mbp
Sequences flagged as poor quality0
Sequence length18-95
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC23020318.838095903566998No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGA10749854.127147082248663No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT6828372.6215888893346695No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC5665062.1749639157535787No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC4201181.6129422995671043No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC2923941.1225766349921305No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG2621451.0064428544361788No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC2613031.0032101973821237No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2405950.9237067980051972No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT2314410.8885622105077863No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC2233110.8573490254134067No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC2224780.8541509217007845No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGA1610800.6184280264455918No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC1590700.6107111135255792No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1446320.5552798753469012No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT1393180.5348780468608577No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC1334270.5122609652629501No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC1330090.5106561545164001No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC1320110.5068245728775082No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC1273780.48903728055988704No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCCCCG1226510.4708890977873No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1201190.46116809106417955No Hit
AGATAACCTCGGGCCGATCGCACGCCCC1159050.4449894487532674No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCG993200.381315319012765No Hit
GATAACCTCGGGCCGATCGCACGCCCC969600.3722546650370287No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCG921350.35373023476883914No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCA904460.34724572435993295No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT884090.3394251514156216No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG800470.30732125796430526No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT787890.3024914686840187No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG772620.2966289184209046No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCC768650.29510473213769817No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC734810.28211267575893056No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC641660.24634996737588677No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC624610.2398040288044333No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCC563760.2164421307356387No Hit
TAGATAACCTCGGGCCGATCGCACGCCCC563300.21626552476831504No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCCT540240.20741219084117615No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC540220.20740451232085771No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC526130.20199499475653046No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT510290.19591360666434138No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCA490730.18840401379292604No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCC459850.1765483784212847No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC457430.17561927746275582No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG443480.1702635095406575No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC431680.16573318255278935No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTTGT417850.1604234857526015No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCC410950.15777439624274642No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT410080.15744038060889515No Hit
CATTGGTGGTTCAGTGGTAGAATTCTCGCCT403200.1547989696193585No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT402930.15469530959505978No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC399490.15337460410029144No Hit
GGGGATGCGTGCATTTATCAGATCAAAACCAA398040.15281791137720596No Hit
GATGCGTGCATTTATCAGATCAAAACCAACC377800.14504724881496436No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC371760.14272833567880136No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATC369630.14191057326488957No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC359170.1378947071383556No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGC349040.1340055365970756No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT324640.12463774180860251No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC318350.12222284716845926No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC313150.12022643188566991No Hit
TTGGTGACTCTAGATAACCTCGGGCCGAT304970.1170859170754359No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTC304330.11684020442524644No Hit
GGGGGATGCGTGCATTTATCAGATCAAAACCAA298410.11456736241099395No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCG275160.10564108254083006No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC271160.10410537847714593No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA265740.10202449947085397No Hit
GGGATGCGTGCATTTATCAGATCAAAACCAA262740.1008727214230909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)