FastQCFastQC Report
Fri 30 Jun 2023
SRR10446729_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446729_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47528252
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length18-44
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC9190861.9337677304016987No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC6365011.3392055739815552No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC4812161.0124841115553755No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4309620.9067491057739722No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT3833700.8066149792338251No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG3578420.7529037676369835No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC3392410.7137670453354775No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCC3367350.7084943919250386No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC3341580.703072353681343No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG3337090.7021276524118749No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC3051010.6419360846681254No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC2873320.604549900130979No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2790770.5871812832502235No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC2424350.5100860852193765No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT2271020.47782527327114827No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG2238430.4709682990234945No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT1866610.3927369346552026No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT1841100.3873696007166432No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT1838830.38689199005256913No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC1692340.3560703221317712No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC1687550.35506250051022287No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCC1615400.3398820558349169No Hit
AGATAACCTCGGGCCGATCGCACGCCCC1492430.3140090235172125No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC1449340.30494283694674906No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCC1422970.299394557998893No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGC1402580.2951044780691703No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1378360.2900085616445562No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG1347690.2835555576502161No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT1302220.27398861628658255No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC1266500.2664730863655579No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCC1257130.26450162736891736No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC1192040.25080661497923384No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC1190770.2505394054887607No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC1180720.24842487369407146No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1111090.2337746399762398No Hit
CTTCTGGCGCCAAGCGTCCGTCCCGCG1084950.22827475329831193No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC989460.20818354523116064No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAT977710.2057113314413499No Hit
ACGGGGTCGGCGGCGATGTCGGCTACCC966780.2034116466138919No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC952110.20032506139716647No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC949660.19980957852184425No Hit
CGCCCCGGGCGTCGTCGCGCCGTCGGGTCC888890.18702349920211667No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC866460.18230420087824817No Hit
ATGCGTGCATTTATCAGATCAAAACCAA858650.180660967712425No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC798230.16794852880345779No Hit
CGGGTCGGGGGTCGGCGCGCGGCGCGGG785400.16524908174615804No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC761760.16027519800223244No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG761740.1602709899787604No Hit
CGTTGGTGACTCTAGATAACCTCGGGCCGATCGC759660.15983335553767053No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG730970.1537969458670603No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC717940.1510554185750404No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT703230.14796041731137094No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC702770.1478636327715145No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT695560.14634664030985192No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCT683250.14375660186282466No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCT673010.1416020938451513No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC663600.1396222188015667No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTC650030.13676707487580228No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGC613010.12897802342909645No Hit
AGAATCCCGCCCAGGCGGAACGATACG597620.12573994936737837No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTCCGCCT587600.12363172960789721No Hit
GCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT574850.12094911464448556No Hit
CTCTCGCTTCTGGCGCCAAGCGTCCGTCCC569000.11971826777892021No Hit
CGCTCGGCGGGGTCCCCGCGTCGTCC568270.11956467492219156No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT549380.11559019675287027No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTC545660.11480750438707488No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT544830.11463287141298611No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGG531740.11187872005055015No Hit
CGTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC525350.1105342565512403No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC515310.10842182876828713No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG502070.10563611722981103No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT499700.10513746644837685No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT494800.10410650069773238No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGT494480.10403917232218007No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG486120.10228021851087644No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC485890.10223182624094823No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC484930.10202984111429135No Hit
CTACGAAGCCGAGCGCACGGGGTCGGCGGCGAT478860.10075270599053379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)