FastQCFastQC Report
Fri 30 Jun 2023
SRR10446734_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446734_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51954483
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length18-44
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC14573292.8050110709406924No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6730101.2953838843897263No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4929680.9488459350081493No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCT4106940.7904880893531363No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT3949970.760275104652663No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC3516960.6769309974656085No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT3001710.5777576499028967No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC2995580.576577770969254No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC2897990.5577940213551927No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC2846800.5479411661165023No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2393460.46068401835506667No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT2310470.44471042085049717No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC2212180.42579193791611786No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC2092070.40267362491125164No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC2019820.38876722149270543No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1957510.3767740312226762No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC1863530.3586851205891126No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG1689980.3252808809588193No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG1671790.32177973939226767No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT1589780.3059947685361435No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1545480.2974680741217269No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC1466440.2822547574960952No Hit
AGGTGAAGCGACTTGCTCGTGGAGCTGAAAT1429720.27518703246455173No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGT1397620.26900854734710766No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCG1218460.23452451639255073No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT1179650.22705451616177186No Hit
GGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1145670.22051417584118774No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT1105330.21274968706742783No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1035490.19930715122311965No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC995210.19155421101967274No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG993580.19124047485950346No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC960990.18496767641783673No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC891460.1715848081868123No Hit
ACCGGACGCCGCCGGAACCGCGACGCTTTCC875710.16855330847965516No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTC873990.16822224946401643No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC824280.15865425895971288No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTC792780.15259125954539862No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTC785950.15127664729143778No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCCCCG770120.14822974949053003No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGT765650.14736938100221303No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG749810.14432055843958644No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTC714170.1374607076736766No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCC701390.13500086219701196No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC693960.1335707642399213No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC670580.12907067134129696No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCC660730.12717478104824947No Hit
GCATCATTGGTCTAGTGGTAGAATTCGTCGTTGCC660710.12717093152481182No Hit
TGGGGAAGGTGGCTCGGGGGGGGGGCGGCGCGT656750.1264087258841552No Hit
AAGCTTGGGCTGCAGGTCGACCCGTGCGGA654530.12598142878257493No Hit
TGTAGTATCTGTTCTTATCAGTTTAATATCTGATAC635400.12229935961445329No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCT630620.12137932351285259No Hit
ATCGACGAGGCCCGTGTTCGATTCACGGATGATGCACC576180.1109009207155425No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT568830.1094862208522025No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC538020.1035560299964875No Hit
GGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC535210.10301517195349628No Hit
GAGTGATCGAAAGATGAAAAGCACTTTGAAAA528820.10178524921516398No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGA526990.1014330178206181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)