FastQCFastQC Report
Fri 30 Jun 2023
SRR10446740_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446740_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45530570
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length18-95
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC21440744.709086664190674No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC13535542.972846595155738No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT12282012.6975304723837192No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC7804241.7140659561257414No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT7786381.7101433168967575No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG7604971.670299756844687No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC6985541.5342527009874904No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC5925711.301479423604844No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC5262901.1559047031477971No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT5215051.145395280577423No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCC4309290.9464608064427923No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC4088770.8980274132302759No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG3261600.716353869499108No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG3012760.6617004794800504No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2789800.6127311825878745No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG2716710.5966782317902016No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC2683210.5893205378276617No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCCAC2598600.5707374188374975No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2565060.5633709395687336No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT2538220.5574759990924778No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG2513370.5520181276008624No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGC2452170.5385766090782522No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC2400810.5272962758867284No Hit
CGGGTCGGGGGTCGGCGCGCGGCGCGGG2369910.5205096268287438No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2338540.5136197504226282No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT2202130.4836596598724769No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT2197050.48254392598203805No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC2096990.46056748246288154No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT2068050.4542113134098694No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT2023530.44443326758263735No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT2016380.44286289409511015No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC1832130.4023955773011407No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1661530.36492624625608683No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAT1642500.360746636820053No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT1615460.3548077698126775No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1540840.3384187810519394No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGA1463550.32144337310075405No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGA1456840.3199696379816901No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1432050.3145249444494106No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAG1398190.30708818273085536No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG1380850.30327975248278244No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC1327050.29146351561159894No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC1184520.2601592732091867No Hit
TCCGGCCGTGCCGGTGCGGCGGATCTTTCCCGCTC1167730.25647164092169283No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCG1164000.25565241111631154No Hit
TTCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1149560.25248091556947344No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG1087730.23890102847383635No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT1087610.2388746725551646No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1084470.23818502601658625No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1065710.2340647173975639No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCC1061050.23304122922247622No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC1053530.23138959165237774No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC1036480.22764485487442834No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG1024360.22498290708857807No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1016690.22329832462013982No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT975660.21428679676094545No Hit
GGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT955900.20994685548632488No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCT951270.20892995629090522No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG936410.2056662150287159No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC928110.20384326398725075No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC897980.19722573207407684No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCCA863070.18955835606714347No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT834140.18320438334068737No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT827480.1817416298544033No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAT811900.17831975308018327No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC803570.17649021305905022No Hit
TGGTGACTCTAGATAACCTCGGGCCGATC759030.16670777457870614No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTC744180.1634462296430728No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT723300.15886029979418223No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC703470.15450498423366982No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATC684900.15042640581921116No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT679650.14927333437732057No Hit
AGATAACCTCGGGCCGATCGCACGCCCC647450.14220116286705833No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC642130.14103271713927587No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC635560.13958973059199567No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC630650.13851133425300846No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT625630.13740877832190548No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGT624130.13707932933850817No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGG614780.13502576400866495No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC614340.13492912564020174No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAA611610.13432952849041863No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTC605500.1329875729647136No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC598380.13142378845685437No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC589050.12937461578012313No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGAC588320.12921428394153642No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT588100.12916596475730482No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCG575270.12634807778597984No Hit
CTTTGGTGACTCTAGATAACCTCGGGCC572920.12583194104532405No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCC565350.12416932184244564No Hit
AACTGTGGTAATTCTAGAGCTAATACATGCC560930.12319854550470156No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT559740.1229371826445397No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCC546490.12002704995786348No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT541050.11883224831140922No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCG536350.11779997483009766No Hit
TTGGTGACTCTAGATAACCTCGGGCCGAT521380.11451207397579252No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCC517210.11359620580194801No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT515220.11315913681730758No Hit
TGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT513970.11288459599780981No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCG490840.10780449267382333No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC488070.1071961102178163No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCT488030.10718732491159237No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC466330.10242129628511129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)