FastQCFastQC Report
Fri 30 Jun 2023
SRR10446741_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446741_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52628577
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length18-69
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC32155326.109859288044213No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT23373014.441125208458515No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC17880823.3975495860357383No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT13934052.647620512331162No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT9504801.806015009678107No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC8838001.6793157831343226No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC8329211.582640169047322No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT8093041.537765309519959No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC6688581.2709026884766428No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC6554201.2453690321134847No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC6254581.1884379849373468No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT5986091.137421975137196No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC5316411.010175517380985No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT5255370.9985772558509419No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT4880590.9273649941171694No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG4548610.8642851962347378No Hit
CGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT3858690.7331929191245281No Hit
ACCGGACGCCGCCGGAACCGCGACGCTTTCC3622110.6882401551537295No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGC3569830.6783063885614844No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT3406500.6472719184484125No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC3311870.6292911928817684No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT3231840.6140846255447873No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTC3222640.6123365258384242No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC3111930.591300426002398No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC2870940.545509714237571No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATC2607460.4954456587340372No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT2432470.462195662253988No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT2427300.4612133062233471No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG2281900.4335857304293065No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC2193860.41685717628276364No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG2065760.39251678798003603No Hit
TTGGTGACTCTAGATAACCTCGGGCCGAT2034150.38651054540197805No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1985860.3773349220519491No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC1861050.3536196694050839No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1810120.3439424174436637No Hit
TGGTGACTCTAGATAACCTCGGGCCGATC1717080.32626380910888014No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1561950.2967874278645231No Hit
AAAAAGCGACGTCGCTATGAACGCTTGGCCGCC1466740.27869649601204305No Hit
GTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1461580.2777160400897786No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC1398890.26580426067761626No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1398160.26566555276613313No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG1396080.26527033022382496No Hit
AGATAACCTCGGGCCGATCGCACGCCCC1375090.26128200274159036No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC1287270.24459525097933013No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTC1244740.2365140900541544No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG1239000.23542342784605405No Hit
GCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1229690.23365442694754981No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT1196550.22735746778789023No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC1143170.21721468927423213No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC1128940.214510835054499No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC1128490.21442533017755733No Hit
GGAAGGACGGACGGCGCCGGACGCGC1125940.21394080254155456No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT1082640.20571333327138983No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCC1067710.20287647146530297No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT1054200.2003094250486765No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT1044170.1984036163470656No Hit
GAACGGAAGGACGGACGGCGCCGGACGCGC1042880.1981585023664995No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1009620.1918387419063221No Hit
AAAAAGCGACGTCGCTATGAACGCTTGGCCGCCAC999950.19000133710626455No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG986400.18742669025613212No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC975360.1853289706084966No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT971350.18456702714952752No Hit
ACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTC949550.18042479088879793No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC934690.17760122984134646No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC928160.17636045907150408No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG906740.17229042692908075No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT882710.16772446650039577No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT880950.16739004742613506No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT879710.16715443398745133No Hit
CTCTCGCTTCTGGCGCCAAGCGTCCGTCCC850280.16156241503546637No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC827410.15721686717845326No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC826690.15708005937534658No Hit
GAGCCGCCCCGGCGGTGAACGGGGAGGAGGCGGGAAC825980.1569451516806164No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAT822620.15630671526611864No Hit
AACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGC819980.15580508665472753No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT813950.1546593213037092No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG774500.1471633937584898No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC756010.14365009337037557No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCT749370.14238842140839186No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC738160.14025839991835615No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCC738140.14025459970160317No Hit
AGCGCCGAAGGAGCCTCGGTTGGCCCCGGAT735030.13966366599651744No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC731320.1389587257888428No Hit
GAGCCGCCCCGGCGGTGAACGGGGAGGAGGCGGGAACC710290.13496279787310228No Hit
AAGGCACGGGCCCCTCTCTCGGGGCGAACCC709460.13480508887785433No Hit
ACGGGCCCCTCTCTCGGGGCGAACCCATTCC708790.13467778161663008No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC707740.13447827023709952No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT701640.13331920412744583No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGC694920.13204233129845028No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC688580.13083766258776103No Hit
ACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGC676950.12862783654591306No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT659920.1253919519807651No Hit
ACCGGACGCCGCCGGAACCGCGACGCTTTC657940.12501573052222179No Hit
CGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTC653920.12425188695487624No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC646630.12286670794842125No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGC641500.12189195235128626No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC625100.11877577461385665No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCC620790.11795682790359313No Hit
AACTGTGGTAATTCTAGAGCTAATACATGCCG620340.11787132302665147No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGC603650.1147000421463039No Hit
AACCTGTCTCACGACGGTCTAAACCCAGCTC601140.11422311494380705No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC600580.1141167088747241No Hit
AACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCAC597800.11358847874606223No Hit
CGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG591000.11229640505005484No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTC589330.11197908695118244No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC574900.10923723056391968No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCC565780.10750433172456858No Hit
GGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT554120.10528880535759118No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGC546630.10386562418360656No Hit
CGGGTCGGGGGTCGGCGCGCGGCGCGGG536310.10190471233907769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)