FastQCFastQC Report
Fri 30 Jun 2023
SRR10446742_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446742_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39650704
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length18-69
%GC71

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT23987276.0496454236979No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10489822.6455570624925095No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6983871.7613482978763757No Hit
AGCGCCGAAGGAGCCTCGGTTGGCCCCGGAT6405911.615585438281247No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT6366891.6057445033006224No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT6200261.5637200287793123No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT5716631.4417474151278624No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC5039481.2709686062572811No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT4375351.103473471744663No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG4333771.0929868987950377No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG4145871.0455980806797276No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC4121591.0394746080674886No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT3602130.9084655848733479No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC3522270.8883247066685122No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT3335950.8413343682371945No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC3163780.7979126927985944No Hit
CGGGTCGGGGGTCGGCGCGCGGCGCGGG3051240.7695298423957365No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC2609210.6580488457405448No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT2517870.6350126847684722No Hit
CGCCGAATCCCGGGGCCGAGGAAGCCAGAT2356300.5942643540452649No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT2230110.5624389418155098No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT2162800.5454632028727662No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG2131410.5375465716825608No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC2097750.5290574411995308No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGC2083860.5255543508130398No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2079040.524338735574531No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC2042180.5150425576302504No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC2037380.5138319864383745No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC1987600.5012773543692944No Hit
CGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1975460.4982156180631749No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC1974950.498086994874038No Hit
GGCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1924220.48529277058989917No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1895180.4779688148790498No Hit
CGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1871720.4720521481787561No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT1825790.46046849508649335No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1781310.4492505353751096No Hit
TTCCGTAGTGTAGTGGTTATCACGTTCGCCT1731700.43673877770240854No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC1724300.43487248044826643No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCC1719440.433646777116492No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC1687420.425571258457353No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT1656610.4178009046194993No Hit
AGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA1569420.3958113833237362No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1526430.38496920508649735No Hit
GGGTCGGGGGTCGGCGCGCGGCGCGGG1420380.3582231478159883No Hit
CCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA1344270.3390280283548055No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT1302780.3285641536150279No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT1254270.3163298185071317No Hit
AGATAACCTCGGGCCGATCGCACGCCCC1229010.30995918760988456No Hit
CCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCA1142840.2882269126923951No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCC1114480.2810744545670614No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1096810.2766180393669681No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1094540.27604554007414345No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG1038730.26197012794526925No Hit
TGGCGCGCGGGCGGGGCCGGGGGTGGGGT1025940.2587444601235832No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT1010210.2547773174468731No Hit
CCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1000540.2523385208999063No Hit
CGTCGCGCCGTCGGGTCCCGGGGG951930.24007896555884606No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT928550.23418247504508372No Hit
CCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCAC926000.23353935909939957No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC922240.23259107833243012No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC917600.2314208595136167No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCC914260.23057850372593638No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCC906840.22870716242516148No Hit
CTCTCGCTTCTGGCGCCAAGCGTCCGTCCC869940.2194008963876152No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG864910.2181323186594619No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT858490.2165131796903278No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC845520.2132421154489464No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG825260.20813249620990334No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCCAC821730.20724222197921124No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGC821440.2071690833030354No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC803020.2025235163542115No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG795960.20074296789282733No Hit
GTTTCCGTAGTGTAGTGGTTATCACATTCGCCT787360.19857402784071626No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG764970.1929272176352783No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCC762810.19238246059893413No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAG760920.191905798192133No Hit
GCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT734510.18524513461349892No Hit
ACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAAC734220.1851719959373231No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGC732180.1846575031807758No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGC716260.18064244206105395No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC691400.17437269209646314No Hit
AGGCGGCCCGGGTTCGACTCCCGGTGTGGGA687630.17342188930617725No Hit
CGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCAC687470.17338153693311473No Hit
AGGCGGCCCGGGTTCGACTCCCGGTGTGGG675460.1703525869301085No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT673790.1699314090362683No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT668790.16867039737806422No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT659620.1663577019969179No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC655620.1653488926703546No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC649680.16385081082040812No Hit
CGCCCCTCCCACGGCGCGACCGCTCT643930.16240064741347343No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT638630.16106397505577708No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG638120.16093535186664026No Hit
TGGGGGGGCCCAAGTCCTTCTGATCGAGGCC634360.15998707109967078No Hit
TCGGGAGGCTGAGACAGGAGGATCGCTTGAGTCCAGG597080.15058496817610098No Hit
GCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT594100.14983340522781133No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC588110.14832271326128282No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC580180.14632274877137114No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTCCG579860.14624204402524607No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT579750.14621430176876557No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC572330.1443429604679907No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC561580.14163178540285185No Hit
ACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA551290.13903662341026782No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC542340.13677941254208248No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT531600.13407075950026007No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCT526920.13289045258818102No Hit
ACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACA521930.13163196295329335No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC521610.1315512582071683No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG518400.13074168872260122No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG518020.13064585183657773No Hit
GTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT516160.13017675549972582No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTC515100.12990942102818653No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCG509460.12848699987773232No Hit
CGCCCGTCCCCGCCCCTTGCCT506690.12778839941908726No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCT504940.1273470453387158No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT498340.1256825099498864No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGC495830.12504948209746794No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT495050.12485276427878808No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA494440.12469892085648719No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCC486240.12263086173703246No Hit
GTCGCGCCGTCGGGTCCCGGGGG477440.12041148121859326No Hit
ACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA476510.12017693305016727No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC470100.11856031610434961No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC469360.11837368637893542No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC467590.11792728825193116No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCCCCG465000.11727408421298145No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCC456710.11518332688367904No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC452110.11402319615813127No Hit
AGGAGATCCTGGGTTCGAATCCCAGCGGTG451490.11386683071251395No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCC451200.11379369203633811No Hit
GGAAGGACGGACGGCGCCGGACGCGC449940.11347591709847069No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC446260.11254781251803248No Hit
CGGGGGTCGGCGCGCGGCGCGGG445740.11241666730557923No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC439990.11096650389864453No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGC439420.11082274856960925No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTCCGCCT437400.11031329985969479No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC436560.1101014499011165No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACC426880.10766013133083337No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGC426360.10752898611838015No Hit
GCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG425320.10726669569347369No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC422360.10652017679181687No Hit
TTCCGTAGTGTAGTGGTTATCACGTTCGCC416010.10491869198589765No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT405970.10238658057622381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)