FastQCFastQC Report
Fri 30 Jun 2023
SRR10446745_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446745_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18579803
Total Bases634.8 Mbp
Sequences flagged as poor quality0
Sequence length18-69
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC7796444.196190885339312No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6191623.3324465280928974No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC5643633.0375079864947976No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC5057332.7219502811735947No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC4575232.462474978878947No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3839562.066523525572365No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC2853251.535672902452195No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG2623611.412076328258163No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC2081711.1204155393897341No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1819420.9792461201014888No Hit
AGATAACCTCGGGCCGATCGCACGCCCC1707070.9187772335368679No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1600000.8611501424423068No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1364080.7341735539391887No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC1328070.7147922935458465No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC1293310.6960838067012874No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT1190590.6407979675564913No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT1105970.5952538893980738No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1080900.581760743103681No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT1036700.5579714704187122No Hit
CGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1035240.5571856709137336No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC992350.5341014649078895No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC960830.517136807101776No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC947900.5101776375131641No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC880270.47377789742980586No Hit
CGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC845990.45532775562797945No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT805090.433314605111798No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG782870.42135538250863047No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC775880.4175932328238357No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT773730.4164360623199288No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT770120.41449309231104337No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG761640.40992899655609916No Hit
GGCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT746910.4020010330572396No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT716010.3853700709313226No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC677810.3648101112805125No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC667890.3594709803973702No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG612230.3295137198171585No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC584640.3146642620484189No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC580240.3122960991567026No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT571480.30758130212683094No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT561830.30238749033022577No Hit
CTCTCGCTTCTGGCGCCAAGCGTCCGTCCC545190.2934315288488258No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC511210.2751428526987073No Hit
GCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT485990.26156897357846043No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCC481110.2589424656440114No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCCCCG477950.2572416941126878No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC459570.24734923185138186No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT454400.24456664045361515No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC440160.2369024041858786No Hit
GACTCTAGATAACCTCGGGCCGATCGCACGCCCC437220.23532004079914087No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT435190.2342274565559172No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC428100.23041148498721972No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC424490.22846851497833426No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC424120.2282693740078945No Hit
CGGGTCGGGGGTCGGCGCGCGGCGCGGG419740.22591197549295866No Hit
TCGGGAGGCTGAGACAGGAGGATCGCTTGAGTCCAGG418090.22502391440856503No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC393680.21188599254792959No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCT391530.21072882204402274No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCC385610.2075425665169862No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCC365450.19669207472221314No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGC363430.19560487266737972No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG356260.19174584359156016No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGA350770.188791022165305No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC340100.18304822715289285No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC326690.17583071252154828No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCCAC315300.16970039994503708No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT304180.16371540645506305No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC291220.15674009030128036No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC289360.15573900326069118No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTCCGCCT285920.15388753045444023No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC284180.15295102967453422No Hit
TTCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT277230.14921040874330047No Hit
TGGGGGGGCCCAAGTCCTTCTGATCGAGGCC271950.14636861327324086No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG262360.14120709460697728No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT259040.13942020806140948No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC256400.1379993103263797No Hit
CTCTCGCTTCTGGCGCCAAGCGTCCGTCC256090.13783246248628148No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT254240.13683675763408257No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGC253810.13660532353330118No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC251860.13555579679719962No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCC249420.1342425428299751No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG248730.13387117183104685No Hit
GGGGATGCGTGCATTTATCAGATCAAAACCAA248500.13374738149807078No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAT247810.13337601049914252No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG246510.13267632600840815No Hit
AGCGCCGAAGGAGCCTCGGTTGGCCCCGGAT245810.13229957282108964No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC243070.1308248532021572No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC241440.1299475564945441No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT241200.12981838397317777No Hit
GCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC239500.1289034119468328No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT237880.12803149742760997No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC237160.12764397986351092No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG232770.12528119916018485No Hit
CCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCA229200.12335975790486045No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC227980.1227031309212482No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC227970.12269774873285794No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC227660.12253090089275973No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT226660.12199268205373329No Hit
CCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCAC224890.1210400347086565No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC216420.11648132114210252No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC215300.11587851604239292No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT213200.11474825648043739No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC210350.11321433278921203No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC209870.11295598774647933No Hit
GGGATGCGTGCATTTATCAGATCAAAACCAA205330.11051247421729929No Hit
ACTCGGGAGGCTGAGACAGGAGGATCGCTTGAGTCCAGG204720.11018416072549315No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT204080.10983970066851623No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC203400.10947371185797826No Hit
TCGGGAGGCTGAGACAGGAGGATCGCTTGAGTCCAGGA203150.10933915714822165No Hit
CCTGGGCAACATAGCGAGACCCCGTCTCT198270.1067126492137726No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC197800.10645968635943019No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGC191980.10332725271629628No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT186470.10036166691326061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)