FastQCFastQC Report
Fri 30 Jun 2023
SRR10446746_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446746_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22220210
Total Bases721 Mbp
Sequences flagged as poor quality0
Sequence length18-69
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC15356816.911190308282415No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCC7919553.564120231086925No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC5498092.4743645537103385No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG2916091.3123593341377062No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2876961.2947492395436406No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC2697101.2138049100346038No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC2463861.1088374052270433No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT2411791.085403783312579No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC2312481.040710236311898No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCC2310611.0398686601071727No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT2228911.0031003307349482No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT2159750.9719755123826463No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2088130.939743593782417No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC2000640.9003695284608022No Hit
CGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC1769490.7963426088232288No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1618580.728426959061143No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCC1600350.7202227161669489No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG1517200.6828018277054987No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC1494810.6727254152863541No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1479910.6660198080936229No Hit
GGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC1371690.6173163979998388No Hit
CGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1367210.6153002154345076No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC1365770.6146521567527939No Hit
GACTCTAGATAACCTCGGGCCGATCGCACGCCCC1364690.6141661127415088No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC1327360.5973660914995853No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG1267910.5706111688413386No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC1138280.5122723862645762No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1130900.5089510855207939No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT1106820.4981141042321382No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC1077430.48488740655466356No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT1077180.48477489636686605No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC1075360.48395582219970024No Hit
AAACCCTTGTGTCGAGGGCTGACTTTC1030350.4636994879886374No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC1018950.45856902342507116No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGC1018130.4581999900090953No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGC1018070.45817298756402386No Hit
GGTGACTCTAGATAACCTCGGGCCGAT1010950.45496869741555096No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC970200.4366295368045577No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT936330.42138665656175167No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT890470.40074778771217734No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG865550.389532772192522No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC787500.35440709156214095No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC772550.3476789823318502No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC733650.33017239711055835No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCCAC720230.32413285022958827No Hit
CTTCTGGCGCCAAGCGTCCGTCCCGCG700750.3153660563964067No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT692810.31179273283195796No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAG654920.2947406887693681No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCG612710.2757444686616373No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGC561500.2526978817931964No Hit
TGGTGACTCTAGATAACCTCGGGCCGAT556700.2505376861874843No Hit
TGGGGGGGCCCAAGTCCTTCTGATCGAGGCC550630.24780593882776086No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTC529230.2381750667522944No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCAC514190.23140645385439654No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC502840.22629849132838978No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCC501100.22551542042131917No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGT500100.22506537967012913No Hit
GCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT484210.21791423213371972No Hit
GGGGTTTCGTACGTAGCAGAGCAGCTC482980.217360682009756No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC479370.21573603489796No Hit
CGGGGTTTCGTACGTAGCAGAGCAGCTC476330.21436791101434233No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT458370.2062851791229696No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC456940.20564162084876786No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC456160.20529058906283965No Hit
GTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC452520.203652440728508No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTCCGCCT451060.20299538123177055No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC449420.2022573143998189No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG449350.2022258115472356No Hit
CTTTGGTGACTCTAGATAACCTCGGGCC449110.20211780176695002No Hit
TCGGGAGGCTGAGACAGGAGGATCGCTTGAGTCCAGG446760.20106020600165345No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGC441400.19864798757527496No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGT429750.1934050128239112No Hit
AGATAACCTCGGGCCGATCGCACGCCCC428660.1929144684051141No Hit
GCCCGTCGCCGCGCTCTCCCTCTCCCCCC427920.1925814382492335No Hit
TTGGTGACTCTAGATAACCTCGGGCCGAT412980.18585782942645457No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTCCG388020.17462481227675167No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTC384860.1732026835029912No Hit
TGGTGACTCTAGATAACCTCGGGCCGATC382720.17223959629544455No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC372820.16778419285866336No Hit
ACCCGTCGCCGCGCTCTCTCTCTCCCCCCGTCC371610.16723964354972343No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCG370420.1667040950558073No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCCCCG352520.15864836560950593No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC349270.1571857331681384No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGC348510.15684370219723395No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTC348420.15680319852962685No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT348060.15664118385919845No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATC331560.1492155114645631No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC330050.14853594993026617No Hit
GACTCTAGATAACCTCGGGCCGATCGCAC329930.14848194504012338No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC328260.14773037698563604No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCG315980.1422038765610226No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT311450.14016519195813182No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCC309930.13948113001632298No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT302740.13624533701526675No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGC302490.13613282682746924No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT302290.13604281867723123No Hit
GGTGACTCTAGATAACCTCGGGCCGATC298670.13441367115792335No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCCA296420.1334010794677458No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCC295990.1332075619447341No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG293740.13219497025455657No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCC287520.1293957167821546No Hit
CGGGTCGGGGGTCGGCGCGCGGCGCGGG285830.1286351479126435No Hit
GTCGTCGCGCCGTCGGGTCCCGGGGG281700.1267764796102287No Hit
GTCGCGCCGTCGGGTCCCGGGGG272360.12257309899411392No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCACGC272330.12255959777157821No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGT271490.12218156354057859No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG270510.12174052360441238No Hit
GACTCTAGATAACCTCGGGCCGATCGC270160.12158300934149587No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC267560.12041290338840181No Hit
GTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT267170.1202373874954377No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT260800.11737062791035728No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCC248450.11181262463316054No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGC246020.11071902560776878No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC241080.10849582429689009No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT236330.10635813072873748No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT235000.10575957652965476No Hit
CTGGGTCGGGGTTTCGTACGTAGC234900.10571457245453575No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCT232880.10480549013713192No Hit
CTCTCGCTTCTGGCGCCAAGCGTCCGTCCC231170.10403592045259698No Hit
GACTCTAGATAACCTCGGGCCGATCGCACGCCC229880.10345536788356186No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCC229710.10337886095585956No Hit
TTTGGTGACTCTAGATAACCTCGGGCC226150.10177671588162307No Hit
CCGTCGCCGCGCTCTCCCTCTCCCCCCGTC226080.10174521302903979No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)