FastQCFastQC Report
Fri 30 Jun 2023
SRR10446747_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446747_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23170199
Total Bases788.2 Mbp
Sequences flagged as poor quality0
Sequence length18-95
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC234318310.112917027600842No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC14905836.433190323484059No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC5645002.4363191701547318No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC5631012.430281241865899No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC3752201.619407757352451No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC3508381.5141777591120387No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC3205691.3835401241051057No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG3201581.3817662938501305No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT3199221.3807477441173466No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC2948181.2724016742368074No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT2898981.2511675018414818No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC2879091.2425831992206886No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC2801581.2091307459206544No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG2789171.2037747280461424No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC2506741.0818810835418375No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC2385741.029658830293171No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT2312980.9982564241247993No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC2196170.947842528240694No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1907630.8233118757417665No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCCCCG1861930.8035882643908236No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG1742030.7518407588989633No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC1506150.6500375762849512No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1448400.6251133190526331No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC1092350.4714461019519081No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT1059570.45729861879908756No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC1035080.4467290073771054No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC1029800.44445021814443636No Hit
AGATAACCTCGGGCCGATCGCACGCCCC836570.3610543008284046No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG802030.3461472212646944No Hit
ACCGCCCGTCCCCGCCCCTTG777020.33535318363040384No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC769160.33196089511358967No Hit
CGGTGGGGGGCGGGGCGGACTGTC755830.32620781547883987No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC644030.2779561798325513No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC628490.27124928879549115No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC593250.2560400970229043No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT583060.2516422064394009No Hit
CCGGTGGGGGGCGGGGCGGACTGTC571450.24663145966074784No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC560980.24211272419369378No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT543720.2346635003005369No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC531170.2292470599842496No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC527380.22761133816761783No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCCA499780.21569948536048397No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC486280.20987303561786413No Hit
TGGGGGGCGGGGCGGACTGTC483960.2088717494398732No Hit
CTTCTGGCGCCAAGCGTCCGTCCCGCG476030.2054492497021713No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT475630.20527661415424187No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT465180.20076651046458427No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC442830.1911204992240248No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT425270.1835417986699208No Hit
TCCGGCCGTGCCGGTGCGGCGGATCTTTCCCGCTC423650.18284262470080642No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCCC419650.18111626922151164No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCC416300.1796704465076023No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC399730.17251901893462374No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC385960.16657604019715153No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG372110.1605985343500934No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT366180.15803921235203894No Hit
ATGCGTGCATTTATCAGATCAAAACCAA365560.15777162725274824No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC346420.1495110162843228No Hit
GTCGCGCCGTCGGGTCCCGGGGG342180.14768107947627035No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT328840.14192368395282234No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCC327340.1412763006480868No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT324980.14025775091530288No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATG319690.13797464579393556No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGA316290.13650724363653502No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCT308480.13313653456321198No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT296200.12783662324177708No Hit
CTTTGGTGACTCTAGATAACCTCGGGCC294150.1269518660586385No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT293060.1264814341905307No Hit
TCCGGCCGTGCCGGTGCGGCGGATCTTTCCCGCTCCCCG292560.12626563975561886No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGC289100.12477234226602887No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC280060.12087077888282272No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACAC275460.11888547008163373No Hit
AAACCCTTGTGTCGAGGGCTGACTTTC257430.11110392275871261No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT245680.10603275353828424No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT244060.10533357956916986No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG238910.10311089688957785No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA236160.10192402749756271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)