FastQCFastQC Report
Fri 30 Jun 2023
SRR10446749_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446749_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34872653
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length18-95
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGC688021619.729545670069896No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC354985610.179483620015947No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATC8877142.545587799127299No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATC8528382.445578201348776No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC6782601.9449624323104986No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG6443481.8477171782714668No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGAT6175651.7709148770528014No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGAT5677551.6280808919241103No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC5665571.624645535285199No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT4451741.2765704978052574No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGC3723151.0676417420836894No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC3561551.0213017059527991No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATC2211980.634302185153507No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG2162690.6201679006182867No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC2152360.6172056941007614No Hit
TTGGTGACTCTAGATAACCTCGGGCCGAT2143250.6145933319154123No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCCCCG2086040.5981879267975396No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC2083540.5974710326742276No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT1888420.5415188801379694No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT1826520.5237685816447634No Hit
GTCGCGCCGTCGGGTCCCGGGGG1818150.5213684201199146No Hit
AGATAACCTCGGGCCGATCGCACGCCCC1770650.5077474317769859No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC1599940.45879503346074646No Hit
TGGTGACTCTAGATAACCTCGGGCCGATC1596460.4577971168410961No Hit
TGGTGACTCTAGATAACCTCGGGCCGAT1449650.41569822634371983No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCC1322150.37913662605480575No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC1199310.3439113164117453No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC1011430.2900352892565989No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTC1002360.2874343973772228No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC998940.2864536862165319No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG963760.27636555211328484No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC885150.25382353329986107No Hit
CGGTGGGGGGCGGGGCGGACTGTC865160.248091247889858No Hit
CGTCGCGCCGTCGGGTCCCGGGGG861530.2470503176228089No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC795300.22805835850802633No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC757440.21720171390458876No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACG673050.19300223587806756No Hit
CTTTGGTGACTCTAGATAACCTCGGGCC637040.1826760929258809No Hit
CCGGTGGGGGGCGGGGCGGACTGTC569120.16319951338373942No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGA567010.16259445474366405No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGC560030.16059288635137683No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCG531190.1523227957448491No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC511280.14661345094679204No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATG498260.14287986635258293No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT485840.1393183363479687No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT465160.1333881881599315No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC456810.1309937617880693No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC449410.12887175518306565No Hit
GGGCGTCGTCGCGCCGTCGGGTCCCGGGGG431890.12384776116689487No Hit
TGGGGGGCGGGGCGGACTGTC407900.11696844515959254No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC398760.11434748024476372No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT397010.11384565435844528No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC380330.10906253676770734No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT376570.10798432800624605No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT369410.10593114323708035No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG369410.10593114323708035No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT368110.10555835829295811No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG353650.10141184268372125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)