FastQCFastQC Report
Fri 30 Jun 2023
SRR10446757_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446757_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56898503
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length18-44
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT16122052.8334752497794184No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT13260912.3306254647859537No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC9884301.7371810291740013No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT7496301.3174863317581484No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT7111481.2498536209291833No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC6234801.0957757535378392No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCG5126690.9010237053161134No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGT4312980.7580129129232099No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCT3460610.6082075656718069No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTC3455360.607284870043066No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC3319490.583405507171252No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC2618960.4602862750185185No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCC2582200.453825648101849No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC2475860.435136228452267No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC2469480.4340149335739114No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC2451180.4307986802394432No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT2447910.4302239726763989No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT2420960.4254874684488623No Hit
GATGAAGAACGCAGCTAGCTGCGAGAATT2385160.4191955630185912No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC2246610.3948451859972485No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT2217790.38978002637433184No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCG2206450.38778700381625153No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG2170690.38150212844791365No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT1975830.3472551817400187No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC1974650.34704779491298743No Hit
GGGGGATGCGTGCATTTATCAGATCAAAA1846460.32451820393236No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1842630.32384507550225No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC1841800.32369920171713484No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCC1835480.3225884519316791No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCC1705470.2997389931330882No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC1639370.2881218157883697No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1592160.279824585191635No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT1549160.27226726861337636No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC1507890.2650140022137314No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT1502170.2640087033572746No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC1498220.2633144847413648No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC1493420.26247087730937313No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1435020.2522069868868079No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCT1312940.23075123786648657No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTG1250300.21974216087899534No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC1219670.21435889095359856No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC1196090.2102146694439395No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCC1190130.20916719021588318No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCCT1166950.20509326932555677No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT1162700.20434632524514748No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1156770.20330411856354114No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCC1094590.19237588728828245No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA1054750.1853739456027516No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC1043770.1834441936020707No Hit
GGGGATGCGTGCATTTATCAGATCAAAACCAA1038630.18254083064364626No Hit
GGGATGCGTGCATTTATCAGATCAAAACCAA1036260.18212429947410042No Hit
TGGGGAAGGTGGCTCGGGGGGGGCGGCGCGT1021920.17960402227102532No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATG1017640.17885180564416606No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTC989830.17396415508506435No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC963610.1693559494878099No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG948900.16677064421185211No Hit
GGGGGATGCGTGCATTTATCAGATCAAAAC940410.16527851356651685No Hit
ACCGGACGCCGCCGGAACCGCGACGCTTTCC937440.164756531467972No Hit
GGGGATGCGTGCATTTATCAGATCAAAAC901160.1583802652945017No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC859760.1511041511935736No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACA797100.14009155917511573No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC795090.1397382985629692No Hit
CGGGTCGGGGGTCGGCGCGCGGCGCGGG794950.1397136933462028No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTC791410.13909153286510895No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGG790290.13889469113097755No Hit
ACAGCCAAGGGAACGGGCTTGGCGGAATC771210.1355413515888107No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAG767390.134869980674184No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCC767140.13482604278710109No Hit
GGGGATGCGTGCATTTATCAGATCAAAA759620.13350439114364748No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCC736730.12948143820233723No Hit
ATCGTTCCGCCTGGGCGGGATTCTGACTT724500.1273319967662418No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTC718920.12635130312655152No Hit
CTCTCGCTTCTGGCGCCAAGCGTCCGTCCC704770.1238644187176594No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC699500.1229382080579519No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCC695740.12227738223622509No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC689690.12121408536881893No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCG678910.11931948367780432No Hit
AAACCCTTGTGTCGAGGGCTGACTTTCAAT669070.1175900884422214No Hit
CATTGGTGGTTCAGTGGTAGAATTCTCGCCT665190.11690817243469481No Hit
CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAG663770.11665860523606396No Hit
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTT658530.11573766712280636No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC651040.11442128802580272No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT648550.11398366667045705No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC636570.11187816312144452No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGC632290.11112594649458528No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGT622700.10944048914608526No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT606140.10653004350571402No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCG597780.10506076056166187No Hit
CGCCCGTCCCCGCCCCTTGCCTCTCGGCGC594110.10441575237928491No Hit
GGGATGCGTGCATTTATCAGATCAAAACCAAC587680.10328566992351275No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGC584430.10271447739143506No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC573900.10086381358750335No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC573000.10070563719400491No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG570490.1002645008076926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)