FastQCFastQC Report
Fri 30 Jun 2023
SRR10446759_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10446759_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107178447
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length18-49
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTGGCGCCAAGCGTCCGTCCCGCG18316021.7089275421204788No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC17182021.6031226875306375No Hit
CGCCCCGGGCGTCGTCGCGCCGTCGGGTC16457811.5355521992215468No Hit
CGCCCCGGGCGTCGTCGCGCCGTCGGGTCC12862131.2000668380649329No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC12487121.165077527200968No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGT12335221.15090490161702No Hit
TGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC10638620.9926081500322542No Hit
ACGAAGCCGAGCGCACGGGGTCGGCGGCGAT10611800.9901057812490975No Hit
TGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC9671690.9023913175379374No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG8007800.7471464855242771No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGC5050930.47126359276319796No Hit
ACGAAGCCGAGCGCACGGGGTCGGCGGCGAC4978110.46446931629826654No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGCGC4769540.44500924705505385No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG4653510.43418337643948135No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC3540880.3303723928748473No Hit
TCCCCGCTCGGCGGGGTCCCCGCGTCGTCC3537820.3300868877116684No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC3230790.30144026998263934No Hit
AAGCCGAGCGCACGGGGTCGGCGGCGAT2843370.2652930770680042No Hit
CCCCGGGCGTCGTCGCGCCGTCGGGTC2485380.23189177204629585No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC2404890.22438186662659892No Hit
TCCCCGCTCGGCGGGGTCCCCGCGTCGTC2312280.21574113683509524No Hit
TTCTGGCGCCAAGCGTCCGTCCCGCG2207490.20596398453133027No Hit
GTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC2184740.20384135627566988No Hit
ACGCACGCGCGCGCGCGCGCGCGGAC2037990.19014923774739897No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1985890.18528818578608441No Hit
GTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1923930.17950717274341546No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1923140.17943346389409803No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCC1846080.17224358550371607No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTT1800350.16797686945398638No Hit
CCCCGGGCGTCGTCGCGCCGTCGGGTCC1632390.15230580827505366No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT1584180.1478077024198718No Hit
GCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1564370.14595938304648137No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT1477610.13786447194929033No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC1451700.1354470082963602No Hit
AAGCCGAGCGCACGGGGTCGGCGGCGAC1396340.13028179070368506No Hit
GCCCCGGGCGTCGTCGCGCCGTCGGGTCC1321770.12332423514216435No Hit
GTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC1255160.11710936621427254No Hit
CTTCTGGCGCCAAGCGTCCGTCCCGCC1251600.11677720988063953No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGCGCG1241840.115866579033376No Hit
TCGTCGCGCCGTCGGGTCCCGGGGG1220990.11392122522544108No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT1201570.11210929376500482No Hit
ATCGCCTCAGCTGCGGCGGGCGTCGCGG1195720.11156347507069214No Hit
TCCGGCCGTGCCGGTGCGGCGGATCTTTCCCGCTC1165040.10870095925163013No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG1149210.10722398319505412No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1143400.10668189659437778No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT1126730.10512654657143894No Hit
AGGCCGGTAGCGGCCCCCGGCGCGCCGGGCT1107440.10332674441532073No Hit
GCCCCGGGCGTCGTCGCGCCGTCGGGTC1095680.10222950888624091No Hit
CGCCCCGGGCGTCGTCGCGCCGTCGGGT1087930.10150641574420274No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGT1081650.10092047704329957No Hit
TCCCCGCTCGGCGGGGTCCCCGCGTCGT1074740.10027575786762427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)