FastQCFastQC Report
Tue 18 Jul 2023
SRR10669485_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10669485_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50714432
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length18-37
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC34586206.819794412762032No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC13151822.593309139299835No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT11217282.211851648067359No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT7430191.4651036612221153No Hit
ACCGAAACAGTTTTATCCGGTAAAGCG7149111.4096795957411097No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6047291.1924199407379739No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC4959420.9779109820257872No Hit
AGCTCGCCGAATCCCGGGGCCGAGGGAGCCC4109980.8104162538979042No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4069880.8025092344522364No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3544750.6989627725693546No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3524960.6950605303042732No Hit
AGCTCGCCGAATCCCGGGGCCGAGGGAG3455220.6813090206748249No Hit
AGCTCGCCGAATCCCGGGGCCGAGGGA3372420.6649823072059645No Hit
TTGGAGCCTCCTTTACACAAGCGCTTCA3354520.6614527399222375No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC3226460.6362015451538529No Hit
ACCGAAACAGTTTTATCCGGTAAAGCGA3201580.6312956438120021No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC3114060.6140382288024048No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC3026280.596729546335055No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG2963890.5844273282997628No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG2897020.5712417325308898No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCC2879110.5677101934218647No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2740820.5404418213734504No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT2452500.48359015437656877No Hit
AGCTCGCCGAATCCCGGGGCCGAGGGAGCC2380290.4693516038984722No Hit
AGCTCGCCGAATCCCGGGGCCGAGGGAGCCCG2227610.4392457752459892No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2139600.4218917407967815No Hit
AGCTCGCCGAATCCCGGGGCCGAGGGAGC2062190.40662784116363565No Hit
TTGGCGCGGCGCGGGAAATGTGGCGTAC1974210.3892797221903225No Hit
ACCGAAACAGTTTTATCCGGTAAAGC1949860.3844783275892748No Hit
CCGAAACAGTTTTATCCGGTAAAGCG1904520.375538071687365No Hit
ACCGAAACAGTTTTATCCGGTAAAGCGAATG1766570.34833674169908874No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1689830.3332049543609204No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGC1688440.3329308706444745No Hit
TTGGCGCGGCGCGGGAAATGTGGCGTA1568000.3091822067532966No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1556050.3068258755219816No Hit
AAATTCTAGAGCTAATACATGC1454290.28676058128778803No Hit
ATTGATCATCGACACTTCGAACGCA1429630.28189806010249707No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1415160.2790448288960429No Hit
TTTGAACCCCATTCGTGATGGGGATCGGGGATT1395220.2751130092514888No Hit
ACCGGCTCCGGGACGGCTGGGAAGGCCC1299690.25627616217805615No Hit
ACCGAAACAGTTTTATCCGGTAAAGCGAAT1250710.24661816186761196No Hit
AGCTCGCCGAATCCCGGGGCCGAGGG1197320.23609058660067414No Hit
CCGAAACAGTTTTATCCGGTAAAGC1191590.23496073070482185No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1115830.2200221822458743No Hit
TTGGCGCGGCGCGGGAAATGTGGCGTACG1064660.20993235219513057No Hit
GCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCC1051780.20739264121108567No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCC1030330.20316307594650768No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT991170.19544140807886798No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCT847850.16718120790547353No Hit
ACCGAAACAGTTTTATCCGGTAAAGCGAA837460.1651324814206733No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC772190.1522623776995077No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG733000.14453479435597347No Hit
ACCGAAGCAGTTTTATCCGGTAAAGCG706260.1392621335086628No Hit
CCCCGGGGCTACGCCTGTCTGAGCGTCGCT690460.13614664953755176No Hit
ACCGAAACAGTTTTATCCGGTAAAG680760.13423397899832537No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC656700.12948976733092465No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC641900.12657146588963078No Hit
ACCGAAACAGTTTTATCCGGTAAAGCGAATGA624250.12309119423835804No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC603750.11904895237710639No Hit
AAAAGCGAATGATTAGAGGT592410.11681290248897987No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGAA584260.11520586487097007No Hit
GAGGGCGCACCACCGGCCCGTCTCG580810.11452558514310088No Hit
AGGGGGGGGCCCAAGTCCTTCTGATCGAGGCC576250.11362643280713466No Hit
TGAGGGCGCACCACCGGCCCGTCTCG568700.11213770470701516No Hit
CCGAAGCAGTTTTATCCGGTAAAGCG556360.10970447228907149No Hit
CCGCGACCGGCTCCGGGACGGCTGGGAAGGCCC552200.10888419296503213No Hit
TAGCTCGCCGAATCCCGGGGCCGAGGGAGCCC543660.10720025416039362No Hit
GAGGGCGCACCACCGGCCCGTCTCGC539440.10636814388456524No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC521050.1027419571612278No Hit
AACCGAAACAGTTTTATCCGGTAAAGCG516430.10183097387347255No Hit
CCGAAGCAGTTTTATCCGGTAAAGC515010.1015509746811322No Hit
TAGCTCGCCGAATCCCGGGGCCGAGGGAG513180.1011901306515668No Hit
TAGCTCGCCGAATCCCGGGGCCGAGGGA511780.10091407510982278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)