FastQCFastQC Report
Tue 18 Jul 2023
SRR10669500_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10669500_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30519130
Total Bases958.7 Mbp
Sequences flagged as poor quality0
Sequence length18-135
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATT6500942.130119698693901No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6199312.0312866061385106No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG5855411.9186031842978486No Hit
ACGTACGCAGTTTTATCCGGTAAAGC4898541.6050719663371793No Hit
ATGTTAGGGATAACAGGGTAATGCGA4882591.599845736100603No Hit
TCGACTGCATAATTTGTGGTAGTGGGG4264141.39720234488991No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC3494891.1451473223515873No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3362441.1017483132710533No Hit
TTAATCCACCTATAACTTCTCTGTTAACCCA2946210.965365002213366No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATT2492570.8167238056917088No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG2361340.7737245458831887No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGCC2167220.7101185387656856No Hit
TTTGAACCCCATTCGTGATGGGGATCGGGGATT2121460.6951246644317842No Hit
TCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC2020810.662145349490631No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1852970.6071503348883144No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1740310.5702357832611873No Hit
TCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC1536440.5034350586009496No Hit
ATGTACACTAGGGATAACAGGGTAATCAACGCGA1423860.46654672004083997No Hit
TTAATCCACCTATAACTTCTCTGTTAACCCAA1350330.44245363481855476No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAG1326430.4346224810471334No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG1301790.42654885640580187No Hit
TCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG1227880.40233125911518447No Hit
TAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG1217550.39894649683657435No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC1199970.3931861753595204No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC1194540.39140696343572046No Hit
ACGTACGCAGTTTTATCCGGTAAAG1136440.372369723514399No Hit
ATTGATCATCGACACTTCGAACGCA1023120.3352389140843792No Hit
TCGACTGCATAATTTGTGGTAGTGGG1015420.3327159063839631No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG930390.3048546927779396No Hit
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG924390.3028887127516413No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT836630.2741329782336521No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGC828290.27140026599709755No Hit
ATAATCCACCTATAACTTCTCTGTTAACCCA822670.2695587980391315No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAA803190.26317591622041653No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC802790.2630448508853299No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAAAGAG765400.2507935186881146No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC755000.2473858199758643No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC727190.23827350255397187No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGCCA723020.2369071464356946No Hit
TTCGACTGCATAATTTGTGGTAGTGGGG685090.22447887603611244No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC673830.22078938685342603No Hit
ATAATCCACCTATAACTTCTCTGTTAACCCAA661730.21682466046705787No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG638810.20931461676659854No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAAAGAGG607550.19907186082958458No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG583620.1912308771580317No Hit
TTGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGC582080.19072627561794847No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG581860.1906541896836509No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC575760.18865544332358097No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG571600.18729236383868086No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGC570410.18690244446679835No Hit
TCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGTG556730.18242001000683833No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC556310.18228239140499744No Hit
CGACTGCATAATTTGTGGTAGTGGGG550600.18041143374663693No Hit
TTGGCAATTTTTGACAGTCTCTACGGAGACTG545200.17864205172296851No Hit
TCTTTCGCCGAATCCCGGGGCCGAGGAAG534580.17516226707642057No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG524670.17191512339965132No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC517720.16963786320252247No Hit
CAAAAAGTAAGTTTAGATTATAGCCAA512730.16800282314731776No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT511110.16747200854021724No Hit
TTGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCA507750.1663710597254902No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAA504530.1653159837780435No Hit
TCGTTGAACCCCATTCGTGATGGGGATCGGGGATT492780.16146593955987606No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG485440.15906089066103785No Hit
TCGCGGCGTGGGAAATGTGGCGTACGGAAG482130.15797632501319664No Hit
ACGTACGCAGTTTTATCCGGTAAA467690.15324486641657217No Hit
ATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCA444350.14559720411427193No Hit
TCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG431230.14129826112343308No Hit
TTCAAAAAGTAAGTTTAGATTATAGCCAA430680.14111804628768906No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT416610.13650782312601967No Hit
TTGGCAGGGGAGATACCATGATCACGAAGGTGGT398330.1305181373125643No Hit
TTCAAAAAGTAAGTTTAGATTATAGCCAAAAGAG393990.1290960784268752No Hit
TCGCGGCGTGGGAAATGTGGCGTACGGAAGA390710.12802134267916548No Hit
TATGTTAGGGATAACAGGGTAATGCGA377850.12380759215613289No Hit
TTGTTGAACCCCATTCGTGATGGGGATCGGGGATT374400.1226771536410114No Hit
AAATGCCTAAAGGAAAGATCCAAAAAGATA374280.12263783404048542No Hit
ATGCCTAAAGGAAAGATCCAAAAAGATA373430.1223593202034265No Hit
AGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGT370910.12153360859238124No Hit
TTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG366480.1200820600062977No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCC364880.1195577986659515No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA361820.11855514885253937No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG352360.11545545367774245No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGG350030.1146919981008633No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAAGAG341920.11203464843198348No Hit
TTTGGCAATTTTTGACAGTCTCTACGGAGACTG340230.1114808973912428No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAA338080.11077642121515259No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG334160.10949198093130441No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC330970.10844673488398916No Hit
ACGTACGCAGTTTTATCCGGTAA330660.10834515924929708No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT330070.10815183788004443No Hit
TCTTTCGCCGAATCCCGGGGCCGAGGAAGCC328610.10767344940697851No Hit
ATGTTAGGGATAACAGGGTAATGCG326660.10703450589843158No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC326550.10699846293128278No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGA325600.1066871827604522No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGAT319340.1046360102663477No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC315710.10344659235043724No Hit
TCTTTCGCCGAATCCCGGGGCCGAGGAAGC310590.10176895606132941No Hit
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT308790.10117916205343992No Hit
ACGTACGCAGTTTTATCCGGTAAAGCGA306750.10051072884449852No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)