FastQCFastQC Report
Tue 18 Jul 2023
SRR10669502_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10669502_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57271882
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length18-135
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCG17060402.9788439639542488No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC13964312.438248842599585No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC13658912.3849242460724445No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG11582692.0224042925636705No Hit
ACGTACGCAGTTTTATCCGGTAAAGC6353211.1093070068834128No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT5491400.9588300241294673No Hit
ATTGATCATCGACACTTCGAACGCA5327400.9301946808732425No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4625150.8075777918385849No Hit
TCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC4545010.7935848869083785No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4448900.7768035281257214No Hit
TCGACTGCATAATTTGTGGTAGTGGGG4265020.7446970225284373No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG4260800.7439601862568441No Hit
TCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC4239990.7403266405668317No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAG4005580.6993973063431023No Hit
TCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG3675140.6417005817968405No Hit
ATGTTAGGGATAACAGGGTAATGCGA3262580.569665232932279No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC3187370.556533134357275No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC3135790.5475269696916892No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG3096710.5407033769206328No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG2752020.4805185204146077No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC2662130.4648232094066684No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGCC2472900.43178256303852564No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG2416370.4219120999027061No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2262000.3949582100340268No Hit
ACGTACGCAGTTTTATCCGGTAAA2180840.3807872072372268No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC2135370.37284788371368693No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATT2115010.3692929106118776No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG2093930.36561222136894334No Hit
ACGTACGCAGTTTTATCCGGTAAAG2067100.36092754905452556No Hit
TAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG1967230.34348967264599406No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG1962070.34258870696793237No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1942550.3391804026974354No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGC1905100.3326414173014255No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC1900730.3318783901670981No Hit
TTAATCCACCTATAACTTCTCTGTTAACCCA1766340.3084131232146344No Hit
TTTGAACCCCATTCGTGATGGGGATCGGGGATT1746000.3048616422278562No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1735380.3030073291462641No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAA1666950.2910590575668528No Hit
TTGGCAATTTTTGACAGTCTCTACGGAGACTG1655860.2891226797820264No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG1606590.28051985440254956No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1584880.27672916353613103No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1546610.2700470014238401No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1537610.26847554965977893No Hit
TATTGATCATCGACACTTCGAACGCA1533070.2676828395476859No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1515490.2646132704352198No Hit
TTTGATCATCGACACTTCGAACGCA1512740.26413310461842343No Hit
TTTGGCAATTTTTGACAGTCTCTACGGAGACTG1503170.2624621275759717No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGC1488310.2598674861077553No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC1484780.2592511278047402No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1337100.23346535041401292No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG1331330.23245787522749817No Hit
ACGTACGCAGTTTTATCCGGTAA1326380.2315935767572646No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAA1304870.22783780704115852No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1267970.22139485480850793No Hit
TTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1245160.21741209761537086No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAAAGAG1222600.2134729918601243No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC1180260.20608018433897457No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1148030.20045264096612017No Hit
TCTTTCGCCGAATCCCGGGGCCGAGGAAG1143710.19969834411937082No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGCCA1137710.19865070960999676No Hit
CAAAAAGTAAGTTTAGATTATAGCCAA1062970.185600675738227No Hit
ATGTACACTAGGGATAACAGGGTAATCAACGCGA1058520.18482368014377457No Hit
TTAATCCACCTATAACTTCTCTGTTAACCCAA1030380.17991027429481013No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1021980.17844358598168644No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG1017840.17772071817021834No Hit
TTCAAAAAGTAAGTTTAGATTATAGCCAA1008390.17607069381795415No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA1002950.17512083852945498No Hit
TCGACTGCATAATTTGTGGTAGTGGG970100.16938503959063192No Hit
ACGTACGCAGTTTTATCCGGTAAAGCGA962880.1681243860643518No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG881440.1539044936571143No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG848710.14818964740847873No Hit
TTCGACTGCATAATTTGTGGTAGTGGGG844810.1475086849773856No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG840370.14673343544044878No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAAAGAGG832440.14534881183055937No Hit
AATTGATCATCGACACTTCGAACGCA829160.14477610496543486No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGGG823060.14371100988090457No Hit
GGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG816870.14263020027873363No Hit
TCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGC810430.14150573923867213No Hit
ATAATCCACCTATAACTTCTCTGTTAACCCA790100.13795600430940963No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCC786510.13732916966130082No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGC785060.13707599132153542No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT781150.13639328283292662No Hit
TCTTTCGCCGAATCCCGGGGCCGAGGAAGCC744590.13000969655580727No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC742410.12962905601740135No Hit
TCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG736940.1286739625563553No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAG725450.12666774247090395No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG721180.12592217591173274No Hit
TCTTTCGCCGAATCCCGGGGCCGAGGAAGC717150.1252185147329365No Hit
TTCAAAAAGTAAGTTTAGATTATAGCCAAAAGAG706270.12331880415593817No Hit
ATAATCCACCTATAACTTCTCTGTTAACCCAA706000.12327166060301634No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCA695810.12149242799459602No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC687550.12005018448669105No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT681400.11897635911458262No Hit
TTAGAGCCACCTTACAAATAAGCGCTCTCA672790.1174730035936308No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCCGGG663150.1157898041485698No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAA650340.11355310447105614No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT646390.11286341175238489No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG644240.11248800938652584No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG641890.11207768587035431No Hit
CCGTGGCGCAATGAAGGTGAAGGGC626970.10947256805704411No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCG602280.10516155205096979No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGG591490.10327755599161208No Hit
ACCGGCTCCGGGACGGCCGGGAAGGCCC590630.10312739504526845No Hit
TCGTTGAACCCCATTCGTGATGGGGATCGGGGATT581640.10155768933872297No Hit
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG578570.10102164968142657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)