FastQCFastQC Report
Sat 30 Sept 2023
SRR10759498.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10759498.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43837851
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length10-40
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCCCGAGTTGTAATTT7841661.7887875023800779No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG7163961.6341950703742298No Hit
TTGCCCGAGTTGTAATTTG6703461.5291488627031466No Hit
ACGTTCTAGCATTCAAGGTC5095841.1624292440795057No Hit
ATAAATCATTTGTATACGACTTAGAT3803440.8676155224853518No Hit
TTTTAAAACCTAAGGGTAAACCTTTA3503360.799163261903509No Hit
TCACGTTCTAGCATTCAAGGTC2431330.5546188840324312No Hit
TTTTTAAAACCTAAGGGTAAACCTTTA2364220.5393101956571731No Hit
AGAGGTGCACAATCGACCGATCCTG2338170.5333678423242051No Hit
TGTTAATAGATAATATACGGATCTTAATA1837510.4191606016453681No Hit
ATATAAAGAATGGTACAGCAATTAATATA1633880.3727098757646674No Hit
TGTACACTGACTGTG1456200.3321786918797639No Hit
TGTGCCCGAGTTGTAATTT1280320.29205811206393306No Hit
AAGAGGTGCACAATCGACCGATCCTG1151920.26276835513675156No Hit
TGTGCCCGAGTTGTAATTTG1046180.23864764721245116No Hit
ATGTATTTATTAGAT965570.2202594283191482No Hit
ATGTATTTATTAGATA959450.21886337448430127No Hit
CTGCCCGAGTTGTAATTT949970.2167008597205187No Hit
AATACTGAATATCTAAATATTATTATTACTT937920.21395209359144912No Hit
GTGCCCGAGTTGTAATTT907200.2069444508126094No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAT906200.20671633744090237No Hit
TTCACGTTCTAGCATTCAAGGTC842290.19213761185510667No Hit
AATACTGAATATCTAAATATTATTATTACT804700.18356283021263978No Hit
TTGTTAATAGATAATATACGGATCTTAATA798340.1821120291685831No Hit
CTGCCCGAGTTGTAATTTG792380.18075247347320927No Hit
ATTAAATCAGTTATCGTTTATTTGATA791110.18046276949114134No Hit
GTTAATAGATAATATACGGATCTTAATA686390.1565747372059821No Hit
TGTACACGGAGTCGAGCACCCGCAACGCGACTG666410.15201703203927583No Hit
GTGCCCGAGTTGTAATTTG604170.13781925578423085No Hit
ATTTTAAAACCTAAGGGTAAACCTTTA597310.13625439805432069No Hit
ATATAAAGAATGGTACAGCAATTAATATAT581240.13258861617098885No Hit
TTAAGGCAAAAGATTGGAAATCTTTTG579690.13223504044484297No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGG565390.12897301922943255No Hit
TATATAAAGAATGGTACAGCAATTAATATA557580.12719145379640073No Hit
TACACGGAGTCGAGCACCCGCAACGCGACTG548750.12517721272422774No Hit
TTCTAGAGCTAATACATGCT518840.11835434177647074No Hit
TGCCCGAGTTGTAATTT511610.11670508209902898No Hit
TATTCTAGAGCTAATACATGCT483070.11019472647051062No Hit
TTAAATCAGTTATCGTTTATTTGATA439920.10035163448135266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)