FastQCFastQC Report
Sat 30 Sept 2023
SRR10759500.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10759500.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55878781
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length10-40
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCCCGAGTTGTAATTTG5631231.0077582043173061No Hit
TCACGTTCTAGCATTCAAGGTC4775410.8546016778712479No Hit
ACGTTCTAGCATTCAAGGTC4327620.7744657135594994No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG2947820.5275383512750573No Hit
TCACGTTCTAGCATTCAAGGTCCC2172200.38873432117282586No Hit
TGTGCCCGAGTTGTAATTTG1823490.3263295954863439No Hit
AAGAGGTGCACAATCGACCGATCCTG1773070.31730649242330466No Hit
AATACTGAATATCTAAATATTATTATTACTT1632170.2920911964776039No Hit
TTCACGTTCTAGCATTCAAGGTC1623330.29050920062125196No Hit
TTGTTAATAGATAATATACGGATCTTAATA1311580.23471879245182534No Hit
TCACGTTCTAGCATTCAAGGTCC1298730.232419171778282No Hit
TTTTAAAACCTAAGGGTAAACCTTTA1291610.231144985070451No Hit
TGTTAATAGATAATATACGGATCTTAATA1219520.21824384465366198No Hit
ATATAAAGAATGGTACAGCAATTAATATA1180200.2112071843514267No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAT1102960.1973844060771476No Hit
ATAAATCATTTGTATACGACTTAGAT1068960.19129980662963997No Hit
TGTGCCCGAGTTGTAATTT1054000.18862258287273662No Hit
ATTTTAAAACCTAAGGGTAAACCTTTA966700.17299947899722437No Hit
AGAGGTGCACAATCGACCGATCCTG957250.1713083182684318No Hit
TTCACGTTCTAGCATTCAAGGTCCC905890.16211699392654969No Hit
TTGCCCGAGTTGTAATTT900170.16109334954891016No Hit
ATATAAAGAATGGTACAGCAATTAATATAT897920.160690692232531No Hit
AATACTGAATATCTAAATATTATTATTACT879960.15747659205378872No Hit
TGCAAGAGTTCGAATCTCTTAGCAACCACCA878880.1572833165419267No Hit
TTTTTAAAACCTAAGGGTAAACCTTTA853760.15278787130306226No Hit
AAGAGGTGCACAATCGACCGATCCTGA754840.13508526608696061No Hit
ACGTTCTAGCATTCAAGGTCCC731510.1309101571131267No Hit
GTGCCCGAGTTGTAATTTG728270.1303303305775407No Hit
TATTATCATAGTAGATAAGCTAAGTTGATA613040.1097089072147082No Hit
ACGTTCTAGCATTCAAGGTCC605030.10827544716839833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)