FastQCFastQC Report
Sat 30 Sept 2023
SRR10759501.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10759501.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74176039
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length10-40
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCCCGAGTTGTAATTTG8927881.203607003064696No Hit
ACGTTCTAGCATTCAAGGTC7305910.9849420511656062No Hit
TTTTAAAACCTAAGGGTAAACCTTTA6598230.8895365793258386No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG6005090.8095727516536708No Hit
ATATAAAGAATGGTACAGCAATTAATATA4013410.5410655589199095No Hit
ATAAATCATTTGTATACGACTTAGAT3904520.526385616250013No Hit
TTTTTAAAACCTAAGGGTAAACCTTTA3777520.5092641843547349No Hit
AGAGGTGCACAATCGACCGATCCTG3439190.4636524201568649No Hit
TGTTAATAGATAATATACGGATCTTAATA3280480.44225602286474214No Hit
AATACTGAATATCTAAATATTATTATTACTT2410870.32502005128637296No Hit
AGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA2332120.31440341536705674No Hit
AATACTGAATATCTAAATATTATTATTACT1957760.263934287459054No Hit
TCACGTTCTAGCATTCAAGGTC1883200.2538825239778576No Hit
TGTGCCCGAGTTGTAATTT1879050.2533230441167127No Hit
TAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA1798380.24244756450260171No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAT1653430.22290621368984126No Hit
TGTGCCCGAGTTGTAATTTG1546070.20843253708923443No Hit
TATATAAAGAATGGTACAGCAATTAATATA1361720.18357949795620657No Hit
TGCAAGAGTTCGAATCTCTTAGCAACCACCA1321130.17810738047093616No Hit
AAAAACAATAATAACTTTCTCCT1281480.1727619885445757No Hit
TTGTTAATAGATAATATACGGATCTTAATA1274170.1717764951024144No Hit
AAAAATATGTACAGTAAAATTGTAAG1231860.1660724968072237No Hit
GTTAATAGATAATATACGGATCTTAATA1184260.15965533020710368No Hit
TTGCCCGAGTTGTAATTT1114520.1502533722513816No Hit
AGGTTTCCGTAGGTGAACCTGCGGAAGGATCATT1018910.13736376513714893No Hit
ATTTTAAAACCTAAGGGTAAACCTTTA1001130.13496676467181No Hit
AAGAGGTGCACAATCGACCGATCCTG992830.13384780494952014No Hit
CTGCCCGAGTTGTAATTTG963150.12984651283415122No Hit
TTCACGTTCTAGCATTCAAGGTC924110.12458335770665781No Hit
CCCGCGCAGGTTCGAGTCCTGCAGTTGTCGCCA912680.12304242883608278No Hit
GGTCCTATAGTGTAGTGGTTATCACTTTCGG903690.12183044716097607No Hit
GACTCCATGGCCAAGTTGG881630.11885644095932381No Hit
TTTTAAAACCTAAGGGTAAACCTTTAT860940.11606713051906155No Hit
TTAAGGCAAAAGATTGGAAATCTTTTG841530.11345038254199581No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAA797530.10751854786961595No Hit
TGGTCCTATAGTGTAGTGGTTATCACTTTCGG787130.10611647785614435No Hit
CGCGCAGGTTCGAGTCCTGCAGTTGTCGCCA775210.10450948991762692No Hit
GTGCCCGAGTTGTAATTTG752130.10139797300311491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)