FastQCFastQC Report
Tue 18 Jul 2023
SRR10811671.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10811671.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19366214
Total Bases545.9 Mbp
Sequences flagged as poor quality0
Sequence length18-151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGACTTAGCTCAGTAGGTAGAGCAACTG439409622.689494188177413No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCG298492815.413069379487391No Hit
GCGAAGGTGGCGGAATTGGTAGACGCG16015898.270016018618817No Hit
GCGGGCATCGTATAATGGCTATTACCTCAGC4037082.084599498900508No Hit
GCCGAGGTGGTGGAATTGGTAGACACG3450881.7819073981109577No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGC2830331.4614782218145477No Hit
GCGAAGGTGGCGGAATTGGTAGACG2728391.408840158432619No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGG2416941.248018843538546No Hit
AGGCTTGTAGCTCAGGTGGTT2127641.098634973258067No Hit
GGCGCGTTAACAAAGCGGTTATGTAGCGGATT2042461.0546511569065589No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTC1683250.869168336154914TruSeq Adapter, Index 1 (100% over 50bp)
AGGCTTGTAGCTCAGGTGGTTAGAGCGC1674780.8647947399527858No Hit
GCGGGCGTAGTTCAATGGTAGAACGAGAGC1595980.8241053207405433No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGAT1582810.8173048175549438No Hit
GCGAAGGTGGCGGAATTGGTAGACGC1403270.7245969707863396No Hit
GCGGGCGTAGTTCAATGGT1232180.6362523929561038No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC1004710.5187952585879718No Hit
GCCGAGGTGGTGGAATTGGTAGACAC989140.5107554837512381No Hit
GGAGAGATGCCGGAGCGGCTGAACGGACCGGT827760.42742479247621656No Hit
CCGTGTGAAAGTAGGTCATCGTCAGGCT787880.4068322285398685No Hit
TCCTCTGTAGTTCAGTCGGTAGAACG775030.40019696157442025No Hit
TAGCTCAGTAGGTAGAGCAACTG770660.39794045444298No Hit
GCGGGAATAGCTCAGTTGGTAGAGC735430.3797489793307045No Hit
GCCCGGATGGTGGAATCGGTAGACAC589760.30453035373873283No Hit
GGTGGCTATAGCTCAGTTGGTAGAGCCCTGGAT583420.3012566111269864No Hit
GCGGGCATCGTATAATGGCTATTACCTCAGCC574090.29643894258320186No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCAC538260.2779376495581428No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACC534620.2760580875539225No Hit
GCGGGCGTAGTTCAATGGTAGAACGAGAGCT492900.25451541535170474No Hit
CGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCT476040.24580953200248637No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGC475420.24548938682594337No Hit
AGGCTTGTAGCTCAGGTGGTTAG472030.2437389156187162No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGG433080.2236265694471826No Hit
GCGAAGGTGGCGGAATTGG432890.22352846044146782No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCG430240.22216009799334038No Hit
GGCTTGTAGCTCAGGTGGTTAGAGCG406990.21015465387297694No Hit
GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATT363210.1875482735035356No Hit
GGTGGCTATAGCTCAGTTGGTAGAGCCCTGG351940.18172886037508415No Hit
GGTGAGGTGTCCGAGTGGCTGAAGG341610.17639482864332698No Hit
GGTGGCTATAGCTCAGTTGGTAGAGC332490.17168559636901667No Hit
GCCGAGGTGGTGGAATTGGTAGAC329950.17037403387156624No Hit
GCCCAGGTGGCGGAATTGGTAGACGC310240.16019651543662586No Hit
AGGCTTGTAGCTCAGGTGG301680.15577644654758024No Hit
GCGGGCGTAGTTCAATGGTAGAACG299950.15488313823238758No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGAC280120.14464365621489053No Hit
GGGTCGTTAGCTCAGTTGGTAGAGC279440.14429252924706915No Hit
GCCGAAGTGGCGAAATCGGTAGACGC273960.1414628589769792No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACG266970.13785348029305058No Hit
GCCGACTTAGCTCAGTAGGTAGAGC250170.12917857873511054No Hit
AGGCTTGTAGCTCAGGAGGTTAGAGCG237920.12285312968244592No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGT231590.11958455070257926No Hit
GGAGCGGTAGTTCAGTCGGTTAGAATACCTG223050.11517480907729306No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGT216490.11178746656419268No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCT216160.11161706671216172No Hit
GCGAAGGTGGCGGAATTGGT214530.11077539471576635No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACT206780.10677358000897852No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTG203710.10518834502190257No Hit
GAAAGTAGGTCATCGTCAGGCT198350.10242063833436933No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCT195860.1011348939963175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)