FastQCFastQC Report
Tue 18 Jul 2023
SRR10811672.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10811672.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26462984
Total Bases789.5 Mbp
Sequences flagged as poor quality0
Sequence length18-151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGACTTAGCTCAGTAGGTAGAGCAACTG683133125.814666252301706No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGT6695282.5300548116569166No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC6380012.410918587261361No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGT5413892.0458350426391823No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGC4603221.7394939285758553No Hit
GCGAAGGTGGCGGAATTGGTAGACGCG4155021.5701252738542262No Hit
TGTGGGCACTCGAAGATACGG3329811.2582896925002864No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC3199661.209107786181634No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGAC3077511.162948970531819No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCCGTC3009121.1371053241765932TruSeq Adapter, Index 2 (100% over 50bp)
GCGAAGGTGGCGGAATTGGTAGACGCGCT2780891.0508603262579912No Hit
GGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTGTG2486200.9395010026080203No Hit
GCGAAGGTGGCGGAATTGGTAGACG2464360.9312479650820935No Hit
GCCCGGATGGTGGAATCGGTAGACAC2436670.9207842925045793No Hit
GCGGGCGTAGTTCAATGGT2154460.8141409902979951No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACT2146160.8110045337290761No Hit
TGTGGGCACTCGAAGATACGGATTCTT2142530.809632806338091No Hit
GGCGCGTTAACAAAGCGGTTATGTAGCGGATT2123580.8024718603162818No Hit
GGTGGCTATAGCTCAGTTGGTAGAGCCCTGGAT1646750.6222843198635497No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTG1109950.41943493598454357No Hit
GGCGCGTTAACAAAGCGGTTATGTAGCGGATTG1104190.4172583107029804No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGG1076190.40667749336204867No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTG1046260.3953673553972598No Hit
GGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTGT1015210.3836339847388337No Hit
TGTGGGCACTCGAAGATACGGATTCT986940.37295113808782865No Hit
GCCCGGATGGTGGAATCGG956480.36144072036622926No Hit
TGTGGGCACTCGAAGATACGGATTC935900.3536638196206444No Hit
CGGCACGTAGCGCAGCCTGGTAGCGCACCGT909520.3436951781401523No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGAT868170.3280695782455977No Hit
TGTGGGCACTCGAAGATACG866220.3273326998950685No Hit
GCGGGCATCGTATAATGGCTATTACCTCAGCC809530.30591032364301773No Hit
GCGGGCATCGTATAATGGCTATTACCTCAGC768290.2903262912451597No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGC719520.27189677475525814No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCT715410.27034366192414283No Hit
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGG709780.2682161618659483No Hit
TGTGGGCACTCGAAGATACGGATTCTTAAC695940.26298621500885916No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGC689930.26071511814389486No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGG686830.25954367050972027No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGAT673890.2546538213528754No Hit
TAGCTCAGTAGGTAGAGCAACTG656540.24809749346483373No Hit
GGTGGCTATAGCTCAGTTGGTAGAGCCCTGG629080.23772073474404853No Hit
GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATT607840.22969442901828457No Hit
TGTGGGCACTCGAAGATACGGAT577620.21827470401675036No Hit
CGGTGATTGGCGCAGCCTGGTAGCGCACTTCGTT572310.21626812758530933No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCG571200.2158486737550081No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTT562300.21248548538592626No Hit
GATTGTCTGATAGAAAGTGAAAAGC546810.20663202607838935No Hit
GCGGGCGTAGTTCAATGGTAGAACGAGAGC541310.20455365124356345No Hit
TGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACG520880.19683343344801932No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCG520840.1968183179946751No Hit
CCGTGTGAAAGTAGGTCATCGTCAGGCT519450.19629305599096458No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTG514500.1944225186396213No Hit
GCCCTGGATTGTGATTCC513850.19417689252277823No Hit
TTTCTCTGAGATGTTCGC511360.19323595555210252No Hit
TTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCG476780.18016864613605177No Hit
GATTGTCTGATAGAAAGTG475200.17957158572895635No Hit
GCCGAGGTGGTGGAATTGGTAGACACGC474280.17922393030204No Hit
GGGGCTGATTCTGGATTCGACGG468440.17701707411378853No Hit
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGC461150.17426228274181021No Hit
GGGGCTGATTCTGGATTCGACGGG458500.17326088395775774No Hit
GCGAAGGTGGCGGAATTGGTAGACGC437280.16524213595866588No Hit
CGGAGCTGCACACTCGCGGGCGTCATT431900.16320910748387257No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCAC415140.15687573253265769No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACC405460.15321779282336415No Hit
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGC404120.15271142513633384No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGAC380850.14391801015335232No Hit
GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCT369420.13959876936025054No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTT347760.13141375137437258No Hit
TGTGGGCACTCGAAGATACGGATTCTTA340320.12860227705235358No Hit
CGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTC339240.12819415981206048No Hit
TGTGGGCACTCGAAGATACGGATT335480.1267733071977068No Hit
GGAGAGATGCCGGAGCGGCTGAACGGACCGGT300160.1134263618947886No Hit
CGGGGTGTAGCTTAGCCTGGTAGAGCGCTACGTT292990.11071691688284283No Hit
GGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGT288970.10919781382175192No Hit
GCCGAGGTGGTGGAATTGGTAGACACG274400.10369200994113136No Hit
GCCCAGGTGGCGGAATTGGTAGACGC272600.10301181454064288No Hit
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATG270190.10210110847665554No Hit
GCGTCCGTAGCTCAGTTGGTTAGAGCACCACCT265920.10048753383216345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)