FastQCFastQC Report
Tue 18 Jul 2023
SRR10811674.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10811674.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19136272
Total Bases539.6 Mbp
Sequences flagged as poor quality0
Sequence length18-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGACTTAGCTCAGTAGGTAGAGCAACTG232365812.142689025323218No Hit
GCGAAGGTGGCGGAATTGGTAGACGCG11559336.040533913815606No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCG10164735.311760827814321No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTC4275532.2342544044106396TruSeq Adapter, Index 9 (100% over 50bp)
TGTGGGCACTCGAAGATACGG2366141.2364686287903934No Hit
GGCGCGTTAACAAAGCGGTTATGTAGCGGATT2320291.212508894104348No Hit
GCGAAGGTGGCGGAATTGGTAGACG2158421.1279208405900585No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC2080041.086961974620762No Hit
GCCGAGGTGGTGGAATTGGTAGACACG1742000.9103131477228167No Hit
GCGGGCATCGTATAATGGCTATTACCTCAGC1407040.7352738297198117No Hit
TTCAGGGACGTCATTACGGGCAGGGATGCCCACC1350890.7059316464565303No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGG1284010.670982310452109No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGC1223080.6391422529947317No Hit
GCGGGCGTAGTTCAATGGTAGAACGAGAGC1102340.5760474140417736No Hit
GCGAAGGTGGCGGAATTGGTAGACGC1002930.5240989467541013No Hit
GCGGGCGTAGTTCAATGGT884930.4624359436362527No Hit
TGTGGGCACTCGAAGATACGGATTCTT841890.4399446245329289No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGC766230.40040714304228114No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCT696180.3638012670388464No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGC684290.35758793562298863No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGAT565650.29559048909839913No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCAC552050.2884835667051555No Hit
TGTGGGCACTCGAAGATAC542790.2836445886638735No Hit
GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATT472110.24670949493192823No Hit
GGTGAGGTGTCCGAGTGGCTGAAGG464400.24268049701634675No Hit
GGAGAGATGCCGGAGCGGCTGAACGGACCGGT462120.2414890423798324No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCG439070.2294438540589306No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACC438320.22905192819165612No Hit
GGTGAGGTGTCCGAGTGGCTGAAGGAGC398160.20806560441866628No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGG376000.19648550146026353No Hit
GGTGAGGTGTCCGAGTGGCTGAAGGAGCACG374180.19553442802234416No Hit
AGGCTTGTAGCTCAGGTGGTT373440.19514772783330003No Hit
TGTGGGCACTCGAAGATACGGAT354080.18503081477938857No Hit
TGTGGGCACTCGAAGATACGGATTCTTAAC351800.18383936014287422No Hit
TCCTCTGTAGTTCAGTCGGTAGAACG344930.18024931919864015No Hit
TGTGGGCACTCGAAGATACGGATTC344280.17990965011366894No Hit
GGTGGCTATAGCTCAGTTGGTAGAGC335500.1753215046274426No Hit
GCGGGAATAGCTCAGTTGGTAGAGC297550.1554900557433548No Hit
GCGGGCGTAGTTCAATGGTAGAACG296430.15490477978155828No Hit
GCCGAGGTGGTGGAATTGGTAGACAC283070.14792327366584254No Hit
GTACTAATGAACCGTGAGGCTTAACCTT281200.14694607183677155No Hit
TAGCTCAGTAGGTAGAGCAACTG256720.13415361152893313No Hit
GCGGGCGTAGTTCAATGGTAGAACGAGAGCT254960.13323389216039572No Hit
GTTCAGGGACGTCATTACGGGCAGGGATGCCCACC237260.12398444169271841No Hit
TGTGGGCACTCGAAGATACGGATT234350.1224637693276935No Hit
ACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTCTTCTGCTT227660.1189677905916053TruSeq Adapter, Index 9 (100% over 50bp)
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTG223540.11681481116071094No Hit
GCGAAGGTGGCGGAATTGGTAGAC219300.11459912359105265No Hit
GCCCGGATGGTGGAATCGGTAGACAC217690.11375778939597013No Hit
GCCGAGGTGGTGGAATTGGTAGAC214830.11226324542209686No Hit
GGTGGCTATAGCTCAGTTGGTAGAGCCCTGGAT210370.10993259293137138No Hit
GCGGGCATCGTATAATGGCTATTACCTCAGCC209510.10948318460356334No Hit
AGGGGCGTAGTTCAATTGGTAGAGC205930.10761239179710658No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC203940.10657248182927166No Hit
GGGTCGTTAGCTCAGTTGGTAGAGC200070.10455014435413544No Hit
TTCAGGGACGTCATTACGGGCAGGGATGCCC199900.10446130782421989No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACT196260.10255916094838116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)