FastQCFastQC Report
Tue 18 Jul 2023
SRR10854595.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10854595.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45691815
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length1-60
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC2578670.5643614726182359No Hit
ACCTCTAGCATTACAAGTATTAGAGGC2263460.4953753752176402No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC1884380.41241084426171293No Hit
AAAAGCATCTGGCCTACACCCAGAAGAT1822990.3989751775017035No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC1368350.29947376789475316No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1307170.2860840612262831No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCG1240320.27145343208625006No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCGT1192850.2610642628225646No Hit
AGAGCCACCTTACAAATAAGCGCTCTC1077270.2357687038696099No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT1050640.22994052654726013No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1047490.22925112517416962No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC1043660.22841290064752298No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGT1003820.21969361470976803No Hit
ACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGCGC974750.21333142489524656No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT886180.19394720914456998No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT874750.19144566701935567No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC868090.1899880755448213No Hit
ACCCCGAGTGTTACAGCCCTCCGGCCGC857160.18759596220898644No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA755940.1654431980870097No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC743750.16277532420193858No Hit
GGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC723690.15838504117203486No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC706820.15469291381837205No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT697510.15265534976012662No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC656580.14369750906152448No Hit
GGTGCCGTAACTTCGGGAGAAGGCACGC649940.1422442947385653No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT631580.13822606959255174No Hit
TCCCCGCGGGGCCCCGTCGTCCCCCGCGTCGT612330.13401306120144277No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCC577730.1264405889763845No Hit
CGCTTCTGGCGCCAAGCGTCCGTCCCGC553910.12122740145034729No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGC553070.1210435610841898No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC530370.11607549404636258No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC527650.11548020143213834No Hit
GCTTCTGGCGCCAAGCGTCCGTCCCGC519080.11360459198217449No Hit
TGACCGGCTCCGGGACGGCCGGGAAGGCCCGG511310.11190406859521776No Hit
TGACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGC500880.10962138404876234No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC490440.10733651092651934No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGG485940.10635165182210425No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC482600.10562066750904948No Hit
TACGGACCAAGGAGTCTAACGCGTGCGCGAGTC478620.10474961434558903No Hit
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT475300.10402300718410945No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC473910.10371879514963457No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT458810.10041404571037504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)