FastQCFastQC Report
Tue 25 Jul 2023
SRR10854596.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10854596.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42561176
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length1-60
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTCTAGCATTACAAGTATTAGAGGC2626370.617081163358832No Hit
AAAAGCATCTGGCCTACACCCAGAAGAT2603660.611745314556158No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC2305470.5416838106165112No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT2222820.5222647043399364No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC2005250.47114534617182574No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1879900.44169362237547194No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC1865730.4383642970767537No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCG1720710.40429099045571487No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT1586390.3727317121124661No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC1580070.37124679073717326No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCGT1570820.3690734485344108No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC1374660.3229844964810183No Hit
TCCCCGCGGGGCCCCGTCGTCCCCCGCGTCGT1211620.28467728429308436No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT1134220.2664916965640235No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC1116740.26238466719058706No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC1107170.2601361390954047No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1054470.24775396243750408No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGT973640.22876247592406748No Hit
AGAGCCACCTTACAAATAAGCGCTCTC962650.22618031043127193No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC881850.20719587259524974No Hit
GGTGCCGTAACTTCGGGAGAAGGCACGC879080.20654504471399004No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC878650.2064440136710508No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC846970.19900061032148172No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT842070.19784932634380215No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG827950.1945317488407745No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT771940.18137186810815567No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC742220.17438897834965839No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT713730.16769508436515007No Hit
GGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAC684750.16088606198287378No Hit
TGACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGC654570.1537950925040229No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC619530.14556223728404497No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGG611650.14371078468320517No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC586490.13779929389169135No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGC586040.13769356373047587No Hit
CCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG565560.1328816666156029No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC558770.13128631596081838No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCG558500.1312228778640891No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC542780.12752937089896202No Hit
GAGAGAGAGACGGGGAGGGCGGCGCCGCCGC537780.1263545913299012No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC533240.12528789148119404No Hit
ACCCCGAGTGTTACAGCCCTCCGGCCGC524870.1233213104825863No Hit
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT513420.12063106526943712No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC507980.11935290509829898No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGA504240.1184741699806415No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT491290.1154314908967741No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCGT483930.11370221537111663No Hit
TCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT476840.11203637794218843No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT471600.11080520895381274No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC468150.1099946110511608No Hit
CCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT463180.10882688015951439No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC461210.10836401700930444No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC460840.10827708332119394No Hit
CCCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT437950.1028989424540337No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC435550.10233504826088452No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCGGCCCCG432610.10164427787427678No Hit
GCCAAGGTCGCGGGTTCGTTCCCCGTACGGGC431430.10136702989597844No Hit
GCGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA431090.1012871448852823No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG430640.10118141472406685No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC429560.10092766233714971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)