FastQCFastQC Report
Tue 18 Jul 2023
SRR10854597.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10854597.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43147474
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length1-60
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTCTAGCATTACAAGTATTAGAGGC2574960.5967811696230467No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC2221980.5149733678499928No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCG2101100.4869578228380183No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCGT2052780.4757590212581158No Hit
AAAAGCATCTGGCCTACACCCAGAAGAT2017940.4676843886620106No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1961630.4546337984930473No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC1742690.4038915464668917No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1667910.3865602885582595No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT1569950.36385675787185134No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC1526920.35388398403113935No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC1433880.33232072867116164No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC1329290.30808060745340504No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1247920.2892220295445337No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC1200710.27828048520291127No Hit
AGAGCCACCTTACAAATAAGCGCTCTC1137240.26357046996540284No Hit
TCCCCGCGGGGCCCCGTCGTCCCCCGCGTCGT1078210.24988948368101457No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1064150.24663089199613403No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT1032490.23929326662320952No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC967740.22428659439020696No Hit
GGTGCCGTAACTTCGGGAGAAGGCACGC957690.22195737344902275No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGT858840.19904757344543508No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC844320.19568237065279884No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT831690.19275520045507183No Hit
TGACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGC819610.18995550006009623No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC749480.1737019413929075No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCG748010.17336124937464475No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC727190.16853593793231095No Hit
CCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT725850.16822537514015304No Hit
ACCCCGAGTGTTACAGCCCTCCGGCCGC709060.16433406970707023No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCGT675120.15646802406092183No Hit
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT673010.15597900354491204No Hit
GGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAC659950.15295217513776124No Hit
TCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT633280.1467710485207083No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC618190.14327374065976609No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC574540.13315727358686166No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG572600.1327076528280659No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT569350.13195442217544415No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGG562520.13037147898854984No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC560480.1298986819019811No Hit
CCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG546360.12662618442043674No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC545320.1263851506115978No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT534730.12393077750043953No Hit
GAGAGAGAGACGGGGAGGGCGGCGCCGCCGC524960.1216664502770197No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC515640.11950641652857824No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC515400.1194507933419231No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT514120.11915413634642899No Hit
ACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGCGC511650.11858168105043647No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT506130.11730234775736814No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCC502460.11645177652809989No Hit
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC494090.11451191789350172No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCC494070.11450728262794713No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC487720.11303558581436308No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC471590.10929724414458192No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC469280.10876187097302614No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCGGCCCCG465890.10797619346152224No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC464630.1076841717315827No Hit
CCCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCG463290.10737360893942481No Hit
CGCTTCTGGCGCCAAGCGTCCGTCCCGC458760.10632372129130896No Hit
CCCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT453320.10506292906045903No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC448000.10382994842293666No Hit
CCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC444020.10290753057757218No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGC441930.10242314532711695No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT438740.10168382047115898No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT433260.10041375770919986No Hit
TCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC432940.10033959346032632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)