FastQCFastQC Report
Tue 18 Jul 2023
SRR10854598.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10854598.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44579444
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length1-60
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC3112730.6982433428285916No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC2692160.6039016547626749No Hit
AAAAGCATCTGGCCTACACCCAGAAGAT2574120.5774230831591349No Hit
ACCTCTAGCATTACAAGTATTAGAGGC2322330.5209418942057689No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCGT2316860.519714871275649No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC2050010.4598554436883511No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCG1992070.44685842201172365No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1813110.4067143592010703No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC1728420.38771681405447767No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC1727880.3875956819919064No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT1644790.3689570466603397No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1584690.3554754967334272No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC1543310.3461931916423184No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT1375150.3084717700830903No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1292230.2898712689193701No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC1235570.2771613750947634No Hit
TGACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGC1222710.2742766374564923No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT1078160.24185137885524097No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC1053350.23628603353599473No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1032740.23166282648119166No Hit
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT1009300.2264047976910614No Hit
GGTGCCGTAACTTCGGGAGAAGGCACGC1001450.22464389641109025No Hit
GGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAC950570.21323056429326487No Hit
TCCCCGCGGGGCCCCGTCGTCCCCCGCGTCGT949560.2130040024725297No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC944530.21187567974154187No Hit
TCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT931130.20886981004069946No Hit
CCCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT915450.2053524938534451No Hit
CCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGT895890.20096482136475277No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT877660.19687549265980075No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC852330.1911935016506711No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC831310.1864783239557676No Hit
GAGAGAGAGACGGGGAGGGCGGCGCCGCCGC738610.16568398654770122No Hit
AGAGCCACCTTACAAATAAGCGCTCTC736480.16520618785644792No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC720010.16151165994802447No Hit
ACCCCGAGTGTTACAGCCCTCCGGCCGC719890.16148474171189753No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC692220.15527784509829237No Hit
TGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC674440.15128945977881644No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC667730.14978428174205133No Hit
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC661970.1484922064079579No Hit
ACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGCGC655140.14696011013506585No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT645530.1448044080585662No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCGT640540.14368505807295398No Hit
CCCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC634850.14240868504326792No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC625990.1404212219425617No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC622700.13968321363541455No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCG609980.13682988060595822No Hit
TCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC602820.13522375918371704No Hit
TGCGCCGGGTTTCGCCCCCGCGGCGTCGGGC594300.13331256441870382No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT592170.13283476572745054No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC590810.13252969238467846No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG574720.1289204055573237No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT561580.125972858701423No Hit
CCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC542590.12171304783433368No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCC539390.12099522820428177No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGG536310.1203043268103568No Hit
GGGGAAACTCGACTGCATAATTTGTGGTAG535040.12001944214467995No Hit
CCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG527990.11843799577222183No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT527980.11843575258587793No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC526550.11811497693869848No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC516650.11589422245822537No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCGGCCCCGT515020.11552858308416768No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC499550.11205837381013545No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC498830.11189686439337376No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCGGCCCCG494540.11093453745183543No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCC487110.10926784999830863No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT487000.1092431749485256No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGCCC483600.10848049159159544No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCC465200.10435302871879694No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC462160.10367110007024763No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT462050.10364642502046457No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC459900.10316413995652346No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT458580.10286803935912704No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGT454820.10202460129381606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)