FastQCFastQC Report
Thu 24 Aug 2023
SRR10887269.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10887269.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50681909
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length39
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAA4180080.8247676700575742No Hit
ATGTACACGGAGTCGACCCAACGCGATGGAATTCTCGGG3014330.5947546293096418No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGGAAT2241220.4422130192451907No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGATGGAA2239910.4419545443720362No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTG1825280.360144287382703No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCTGGAATTCT1690290.33350953690398677No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAAT1654890.32652479605691254No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCTGGAATT1456060.28729383496584554No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCTGGAAT1109680.21894992155879525No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCGTGGAATTCTC1011340.1995465482564992No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTTGGAATT997390.19679408682099958No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAA976640.1926999237538586No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAATT906530.17886658531350902No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTC839340.1656093893385113No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTG839160.1655738737070855No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCGTGGAATTCTCG813930.16059576603556902No Hit
TCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATT805910.1590133473464861No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCTGG778500.15360510591659046No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT778080.15352223610993027No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGCTGGAAT725720.14319113354629165No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTGGAA707230.13954288896260794No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTTGGAAT682240.13461213546632586No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGGAATT670800.1323549197801527No Hit
ACGTAGCAGAGCAGCTCCCTCGCTGCGATCTTGGAATTC639990.1262758275344364No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTG622580.12284067673930751No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTGGAAT609740.12030722836426702No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTTGGA585440.11551261812178384No Hit
CGGCGGATCTTTCCCGCTCCCCGCCTCCCGACCCCTTGG566290.11173414955620556No Hit
ATTGAAAGTCAGCCCTCGACACAAGGGTTTGTTGGAATT564370.11135531615433035No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAA552580.10902904229594035No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTGG539090.10636734302964003No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCTGGAATTC530740.1047198123496098No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCTGG518840.10237183449423738No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATT510890.10080322743959783No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTTGGAATTC508770.10038493222502727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)