FastQCFastQC Report
Thu 24 Aug 2023
SRR10887270.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10887270.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49579994
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length39
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAA5462111.101676212385181No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTG2206250.44498795219700915No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGGAAT2072030.41791654916295473No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCTGGAATTCT1904010.3840278802776781No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCTGGAATT1860400.3752319937755539No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAA1342330.2707402505938181No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTTGGAATT1241960.2504961981237836No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTGGAA1106830.2232412533168116No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT1066010.21500809378879718No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTTGGAAT1022320.20619607174619664No Hit
TCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATT982370.19813838622086158No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCGTGGAATTCTC957420.1931061145348263No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTC930670.18771079318807501No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGATGGAA912420.18402987301692694No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTG892870.18008675031303956No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTGGAAT870730.1756212394862331No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTGG860930.17364463577789058No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAA860030.17346311094753258No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCTGG778900.15709965596203984No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAATT746820.1506293042310574No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTGGA740620.14937879984414681No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCTGGAAT724850.14619808142776297No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTC709740.14315048122030832No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGCTGGAAT704800.14215411159589894No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCTGG697320.14064543856136813No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTTGGAATTC682710.13769868548189013No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTTGGA680290.13721058538248312No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAAT653820.13187173842739877No Hit
CGGCGGATCTTTCCCGCTCCCCGCCTCCCGACCCCTTGG646790.13045382780804693No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTCTG607450.12251917577884339No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCTGGAATTC579480.11687778743982905No Hit
ATGTACACGGAGTCGACCCAACGCGATGGAATTCTCGGG541100.1091367618963407No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTGGAA524320.105752332281444No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCTGGAAT522310.10534692682697784No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTTGG522240.1053328082290611No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCGTGGAATTCTCG510740.10301332428559794No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT499350.10071602671028965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)