FastQCFastQC Report
Thu 24 Aug 2023
SRR10887278.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10887278.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61439960
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length39
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTGGAATTC6754201.0993171219512514No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTGGAATT5855110.9529807636593514No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAATT4705240.7658273215021624No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGGAAT4338160.7060811888549406No Hit
GGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTCT3885880.6324678596795962No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAAT3570380.5811169147896581No Hit
TCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATT3223980.5247366697504361No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTTGGAATT2830010.4606139066496788No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTC2747730.44722197084763726No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCGTGGAATT2609640.4247463702775848No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTTGGAAT2366170.38511906583272515No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTC2174100.3538576522510757No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCTGGAATT2054510.3343931213496884No Hit
CCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTGGAATT1908680.31065775433447546No Hit
TGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTCT1734830.28236183747515464No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCGGCCCCGTGGAAT1618730.2634653407977479No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCGTGGAATTCTCG1583660.25775732926909456No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCTGGAATTCT1456990.23714045386748298No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCGTGGAATTCTC1335630.2173878368410396No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAAT1327460.216058083371148No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCTGGAATTC1280990.20849460188450641No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTGGAATT1229830.20016777354672755No Hit
TCGGGGGCCCGAGGTGGGATCCCGAGGCCTGGAATTCTC1227760.19983085926488237No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATTCTC1216090.19793144396578383No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATT1195410.19456555635778408No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCTGGAAT1186590.19313000854818263No Hit
TGGAATTCTCGGGTGCCAAGGAGATCGGAAGAGCGGTTC1184040.19271496921547476RNA PCR Primer, Index 1 (95% over 22bp)
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTGGAATTCT1113750.18127453207977348No Hit
AAGTGGGAGGCCCCCGGCGCCCGGCCCCGTGGAATTCTC1089430.17731619616939853No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTGGAATTC1032820.16810232298328318No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTGGAA1002960.16324229377753502No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGGAAT964870.15704274547053743No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTGGAATTCTCG928550.15113128328859587No Hit
ACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAATTC908460.14786142438894817No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGGAATTCTCG804190.13089038469426087No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTGGAA803450.13076994190751426No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCTGGAAT789990.12857918527290707No Hit
CCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTTGGAAT780660.12706062959676406No Hit
GCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGGAAT770740.12544604521226901No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTGGAATT761180.12389005461592097No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGGAATTC757720.12332690320761927No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGGAATT712740.1160059348996972No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGTGGAATTCTC711740.11584317437706665No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTGGAATTCTC711640.1158268983248036No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTGGAATTCTCG708610.11533373394123304No Hit
TCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTGGAATTC665970.10839362525626643No Hit
CCTTCTGGCGCCAAGCGTCCGTCCCGCGTGGAATTCTCG655690.10672044708362441No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTTGGA649110.1056494828447154No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGGAATTCT645590.10507656580505587No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGTGGAATT615020.10010097662824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)