FastQCFastQC Report
Tue 25 Jul 2023
SRR10919493.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10919493.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26574028
Total Bases843.8 Mbp
Sequences flagged as poor quality0
Sequence length1-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2789891.0498558968930114No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2651240.9976808935401137No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG2556200.9619166503474746No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT2532330.9529341957493234No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT2138590.8047669702161826No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC1359460.5115746848765268No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1194060.44933346198024626No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT1084420.4080751326069198No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC1043930.3928384511373285No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC1020540.3840366240300492No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT1007900.37928010010375546No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC951500.35805636992630546No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC867810.32656321427824186No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG855010.32174648118832416No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC798490.3004775941381562No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT793760.2986976607385226No Hit
ACCTCTAGCATTACAAGTATTAGAGGC777460.2925638521943305No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC756720.2847592393595732No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT732820.2757654955432425No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT708610.2666550964723903No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC703490.26472840323642316No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC697400.26243669194598573No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC687270.2586246992740431No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC629080.2367273790785499No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT620840.23362660715191538No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC612320.23042046918893894No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT611310.2300403988435626No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC605190.22773739833494572No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC594470.2237033843721396No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC593960.2235114676630882No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG565450.21278294731984174No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC547230.205926628812162No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC536980.20206947926750132No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT516680.19443044163270995No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC512700.19293273868756367No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC500880.18848478672484276No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT493080.18554958999817417No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC491960.18512812585280636No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC489800.18431530214388275No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT475260.17884379439955433No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC474400.17852017014507549No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC465600.17520866614575706No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT460390.17324810525525147No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC450760.1696242662196337No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC429790.16173310271216693No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT429640.16167665662126945No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC427500.16087135905779884No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA424760.15984027713073834No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT416250.15663790224048835No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC407480.15333768745934942No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC395390.14878813253301307No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT392220.14759523847871311No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG391950.14749363551509767No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG386480.14543523473370315No Hit
TGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC385960.14523955495192523No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT378600.14246993342522254No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC378270.1423457520252481No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC374160.14079912913465736No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC372990.14035884962565703No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT371970.13997501620755423No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC364590.13719786853539853No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG363280.1367049060082273No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC358730.1349927079176706No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG352540.1326633658999682No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT341170.12838475220993972No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT338930.1275418239192041No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT335720.1263338775739982No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT332740.12521248190150172No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC330330.12430558137441565No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC329210.12388411722904787No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC326830.12298850592014127No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC325880.12263101401112395No Hit
GCGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA324960.12228481132028611No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC320660.12066669004789188No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC302720.11391573757655407No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC298770.11242932384958727No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC297830.11207559501329645No Hit
GGAGGCGTGGGTTCGGATCCCACTTCTGACAC295620.11124395594074034No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC295110.11105203923168894No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC294880.11096548855897947No Hit
ACCTCTAGCATTACAAGTATTAGAGGCAC293940.11061175972268865No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCG292130.10993064355919245No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC291900.10984409288648299No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG291340.1096333608137991No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT289740.10903126917755938No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG287000.10800018725049887No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT282050.10613746625088225No Hit
AATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG276070.10388714876043631No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCT268470.10102721348829767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)